SRR3554253_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554253_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1106400
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3122	0.28217642805495297	No Hit
CTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTGCT	1318	0.11912509038322487	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACGGT	20	7.033171E-4	45.000004	3
CGCGGAT	40	6.8139343E-9	45.000004	23
TGCGATG	20	7.033171E-4	45.000004	1
TATAGCG	20	7.033171E-4	45.000004	1
CGCGTTG	20	7.033171E-4	45.000004	1
TCGAACG	20	7.033171E-4	45.000004	1
TAGTACG	20	7.033171E-4	45.000004	1
TCCGACG	25	3.8907107E-5	45.0	1
GTGATCG	25	3.8907107E-5	45.0	15
CCATGCG	45	3.8562575E-10	45.0	1
AATTGCG	105	0.0	45.0	1
GCGGAAT	35	1.2118653E-7	45.0	5
CAGTACG	70	0.0	45.0	1
CCACGCG	70	0.0	41.785713	1
ATTGCGG	255	0.0	41.47059	2
AAACGCG	60	3.6379788E-12	41.249996	1
GCTAGCG	55	6.184564E-11	40.909092	1
TGTAGCG	50	1.0822987E-9	40.5	1
TACACCG	50	1.0822987E-9	40.5	1
CATTGCG	90	0.0	40.0	1