SRR3554252_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554252_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	834837
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5294	0.6341357654248674	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1085	0.12996549026935797	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	960	0.11499250751943194	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTCGAT	25	3.889884E-5	45.000004	45
CGACACG	25	3.889884E-5	45.000004	1
ATTCACG	25	3.889884E-5	45.000004	1
TGCGATA	25	3.889884E-5	45.000004	21
CGTAGCG	50	2.1827873E-11	45.000004	1
GTATACG	30	2.1647847E-6	45.000004	1
TGTAACG	25	3.889884E-5	45.000004	1
TATACGG	75	0.0	45.0	2
CGCTTAT	35	1.2113924E-7	45.0	23
CTTACCG	35	1.2113924E-7	45.0	1
TTAACGG	90	0.0	42.5	2
TAACGCG	55	6.002665E-11	40.909092	1
GTACGGG	340	0.0	40.367645	3
CTTAACG	45	1.9272193E-8	40.0	1
TAAACCG	45	1.9272193E-8	40.0	1
TAACGTC	45	1.9272193E-8	40.0	32
ACTTACG	45	1.9272193E-8	40.0	1
CTTTACG	45	1.9272193E-8	40.0	1
GTAACGG	90	0.0	40.0	2
TAAGCGG	130	0.0	39.80769	2