SRR3554248_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554248_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	410934
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6241	1.5187353686966765	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1235	0.30053487908033893	No Hit
CTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTGCT	1002	0.2438347763874491	Illumina PCR Primer Index 7 (95% over 23bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	915	0.22266349340770047	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	585	0.1423586269327921	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGAC	20	7.0279895E-4	45.000004	33
CGAACCG	30	2.1620835E-6	45.000004	1
ACGCCAT	20	7.0279895E-4	45.000004	14
GATCGTA	20	7.0279895E-4	45.000004	18
TCCGCAA	20	7.0279895E-4	45.000004	15
CGTATAG	20	7.0279895E-4	45.000004	1
CGGCCGT	20	7.0279895E-4	45.000004	22
GCGAAAG	35	1.2093733E-7	45.000004	1
ATAGCGG	70	0.0	45.000004	2
ATCGTCG	30	2.1620835E-6	45.000004	1
CGTTAGA	20	7.0279895E-4	45.000004	27
ACGGCAT	20	7.0279895E-4	45.000004	5
GTTAACG	20	7.0279895E-4	45.000004	22
CGCTATG	20	7.0279895E-4	45.000004	1
TCGTCGG	30	2.1620835E-6	45.000004	2
CCCCCGA	20	7.0279895E-4	45.000004	22
GGACGTT	30	2.1620835E-6	45.000004	8
CGTACTA	20	7.0279895E-4	45.000004	33
TCGTATT	20	7.0279895E-4	45.000004	20
CGCAGCG	20	7.0279895E-4	45.000004	1