SRR3554247_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554247_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	401650
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6014	1.497323540395867	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1154	0.287314826341342	No Hit
CTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTGCT	1085	0.27013569027760487	Illumina PCR Primer Index 7 (95% over 23bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	890	0.2215859579235653	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	556	0.13842898045562058	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACTACG	30	2.1619617E-6	45.000004	1
TTCTCGG	30	2.1619617E-6	45.000004	2
TCACGCG	20	7.0278015E-4	45.0	1
AACGTTC	25	3.8862592E-5	45.0	14
CTTCGGG	45	3.8380676E-10	45.0	3
CGGGTCA	40	6.7957444E-9	45.0	6
CGAACCG	20	7.0278015E-4	45.0	1
TCCGCAA	25	3.8862592E-5	45.0	15
CGTATAG	20	7.0278015E-4	45.0	1
GCAACCG	20	7.0278015E-4	45.0	1
TTTCGCG	20	7.0278015E-4	45.0	1
CGCATGG	50	2.1827873E-11	45.0	2
CGACCCG	20	7.0278015E-4	45.0	1
ACTTCGG	25	3.8862592E-5	45.0	2
CGATTGG	20	7.0278015E-4	45.0	2
CCTCGTC	70	0.0	45.0	36
TAACGCG	25	3.8862592E-5	45.0	1
CGACAAG	35	1.2092823E-7	45.0	1
TATGCGG	25	3.8862592E-5	45.0	2
ACTTACG	40	6.7957444E-9	45.0	1