SRR3554243_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554243_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	443984
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5808	1.3081552488377959	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1091	0.24572957584057084	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	962	0.21667447475584703	No Hit
CTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTCTGCT	881	0.19843057407474143	Illumina Single End Adapter 1 (95% over 22bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	583	0.13131103823561208	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACACG	25	3.886924E-5	45.000004	1
GCGCGAC	25	3.886924E-5	45.000004	9
CCGGCCG	25	3.886924E-5	45.000004	1
TATGGTC	25	3.886924E-5	45.000004	15
TTTCGCA	25	3.886924E-5	45.000004	22
CGTTGGG	50	2.1827873E-11	45.000004	3
ACTCTCG	25	3.886924E-5	45.000004	33
GCGCAAT	25	3.886924E-5	45.000004	19
CGCCTGA	25	3.886924E-5	45.000004	36
ATCCGAG	25	3.886924E-5	45.000004	1
GTTACGA	25	3.886924E-5	45.000004	35
TATCTCG	25	3.886924E-5	45.000004	1
AACATCG	25	3.886924E-5	45.000004	1
TGTTCCG	25	3.886924E-5	45.000004	45
GCGGGCC	25	3.886924E-5	45.000004	5
CGTAACA	25	3.886924E-5	45.000004	32
ACCGTTG	25	3.886924E-5	45.000004	1
CACACGT	25	3.886924E-5	45.000004	36
ACGTAAC	25	3.886924E-5	45.000004	31
GGCGCGA	25	3.886924E-5	45.000004	8