SRR3554241_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554241_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	474050
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3513	0.7410610695074359	No Hit
CTGTCTCTTATACACATCTGACGCAGCTTTCGTCGTATGCCGTCTTCTGCT	986	0.20799493724290688	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	637	0.13437401118025524	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	635	0.13395211475582744	No Hit
TGAATGATACCTGTCTCTTATACACATCTGACGCAGCTTTCGTCGTATGCC	532	0.11222444889779559	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAC	35	1.2099008E-7	45.000004	6
TCCGCAC	30	2.162793E-6	45.000004	39
GCGAAGT	30	2.162793E-6	45.000004	3
TATGCGG	70	0.0	45.000004	2
ATCCGTC	30	2.162793E-6	45.000004	34
TGACCTA	30	2.162793E-6	45.000004	26
TACGAAT	75	0.0	45.000004	11
TCTAACG	30	2.162793E-6	45.000004	1
CATACCG	30	2.162793E-6	45.000004	1
ACTAACG	35	1.2099008E-7	45.000004	1
TAGTGCG	30	2.162793E-6	45.000004	1
CGAAGTA	30	2.162793E-6	45.000004	33
TAATCAC	20	7.0290884E-4	45.0	26
CTTCGCA	25	3.8873255E-5	45.0	14
AACGTAC	20	7.0290884E-4	45.0	26
AATCCGT	20	7.0290884E-4	45.0	33
CTCACCG	50	2.1827873E-11	45.0	1
CGTATTT	25	3.8873255E-5	45.0	26
CGTATAT	20	7.0290884E-4	45.0	42
CTATCGA	25	3.8873255E-5	45.0	38