SRR3554240_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554240_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	280605
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5963	2.1250512285953564	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1142	0.4069777801535967	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1134	0.40412679745549795	No Hit
CTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCGTCTTCTGCT	919	0.32750663744409403	TruSeq Adapter, Index 15 (95% over 22bp)
TTGTGCGGGGTTGTGCGGGGTTGATTGTTGCATCTTTATCTTTGTAGTTCA	555	0.19778692468060086	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	477	0.16998984337413803	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCGT	335	0.1193849004828852	No Hit
AATCTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCCGTCTTCT	308	0.10976283387680191	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTCGTGGTATCGTATGCC	295	0.10512998699239146	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTTACG	30	2.159617E-6	45.000004	1
CAGGTCG	30	2.159617E-6	45.000004	1
CGGGTAA	25	3.8832448E-5	45.000004	6
TCGCATT	25	3.8832448E-5	45.000004	22
GAACTAC	30	2.159617E-6	45.000004	33
TAGCGGA	25	3.8832448E-5	45.000004	3
GACCGAT	50	2.1827873E-11	45.000004	9
TCCCTAG	25	3.8832448E-5	45.000004	42
CGACAGG	30	2.159617E-6	45.000004	2
GCACCGG	25	3.8832448E-5	45.000004	2
TACGCGG	60	0.0	45.000004	2
ATTCACG	30	2.159617E-6	45.000004	1
CGTAGCG	25	3.8832448E-5	45.000004	1
GGTATAT	25	3.8832448E-5	45.000004	8
AAATTCG	30	2.159617E-6	45.000004	30
GCTAGTA	30	2.159617E-6	45.000004	34
GCGATGA	25	3.8832448E-5	45.000004	9
ACTAACG	30	2.159617E-6	45.000004	1
ACGTCCC	25	3.8832448E-5	45.000004	39
ATTGGGC	35	1.2075361E-7	45.000004	4