SRR3554235_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554235_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	433923
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5259	1.2119661783311786	No Hit
CTGTCTCTTATACACATCTGACGCCCGAAACTTCGTATGCCGTCTTCTGCT	1056	0.24336114932833708	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	932	0.21478465073296416	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	805	0.18551678523609028	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	499	0.1149973612829926	No Hit
AAGCTGGGGCTTGTTGTGTTACCTGTAAAATAAGTATTAGTTTATAAACAG	448	0.10324412395747633	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCACC	25	3.8867773E-5	45.000004	45
AGTATAC	25	3.8867773E-5	45.000004	22
TAGCACG	25	3.8867773E-5	45.000004	1
CACTAGA	25	3.8867773E-5	45.000004	37
CGCTAAG	35	1.2095916E-7	45.000004	1
TATTACG	25	3.8867773E-5	45.000004	1
CCCTTAC	25	3.8867773E-5	45.000004	45
TTACGTC	25	3.8867773E-5	45.000004	43
ATTGCGG	25	3.8867773E-5	45.000004	2
TGTACCG	25	3.8867773E-5	45.000004	1
TAATCCG	25	3.8867773E-5	45.000004	1
CCGGGTC	40	6.7975634E-9	45.0	5
GTACCGA	20	7.028428E-4	45.0	13
ATCTCCG	20	7.028428E-4	45.0	26
ACTGCCG	20	7.028428E-4	45.0	1
GTTTCGC	20	7.028428E-4	45.0	9
CATGCGG	20	7.028428E-4	45.0	2
GGCCGTA	20	7.028428E-4	45.0	9
CGACCCG	20	7.028428E-4	45.0	32
TGAAACG	20	7.028428E-4	45.0	1