SRR3554232_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554232_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	346588
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	8467	2.4429582097475966	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1584	0.4570267868477847	No Hit
CTGTCTCTTATACACATCTGACGCTTGTTGCCTCGTATGCCGTCTTCTGCT	1235	0.35633085969508466	TruSeq Adapter, Index 14 (95% over 22bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1185	0.3419045091001419	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	838	0.24178563597123962	No Hit
AACACGGGATCAGAGAATAGAAAGCAGTAAAAGAGAATGATTTTGGTTTGC	454	0.1309912634020797	No Hit
AAGGTAGGGGTTGTTTTGGTTTTCAAAAGAAAAGGAAAAAAATCCACTTTT	410	0.11829607487853014	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGG	30	2.1610977E-6	45.000004	2
ACGCGAC	20	7.0264586E-4	45.000004	18
CGGGTTG	40	6.7921064E-9	45.000004	6
ACAACCG	30	2.1610977E-6	45.000004	1
TTTAGCG	30	2.1610977E-6	45.000004	1
CTTCGCG	25	3.8851475E-5	45.000004	1
CGTGGTC	20	7.0264586E-4	45.000004	18
AGCGTAT	20	7.0264586E-4	45.000004	12
AGCCGTA	25	3.8851475E-5	45.000004	25
TCGTTGG	30	2.1610977E-6	45.000004	2
CGAACGC	20	7.0264586E-4	45.000004	33
CGAACCG	30	2.1610977E-6	45.000004	1
CTCGTTG	20	7.0264586E-4	45.000004	1
CGTATTC	20	7.0264586E-4	45.000004	14
CATATCG	30	2.1610977E-6	45.000004	1
TCACCCG	30	2.1610977E-6	45.000004	1
CGAGTTT	20	7.0264586E-4	45.000004	15
ATAGGGC	50	2.1827873E-11	45.000004	4
CGAAACT	20	7.0264586E-4	45.000004	12
CGAAAAC	20	7.0264586E-4	45.000004	29