SRR3554228_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554228_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	446714
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5047	1.1298056474612392	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1313	0.29392407670231957	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1152	0.25788311984849366	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	857	0.19184534176229084	No Hit
GTAAAGGGGAAGAAGATTGATCAAACTGAATGAAACACACACACACACACA	789	0.17662307427123394	No Hit
ACAGGCAGAATTTGAAACCTAAAGAACTCCCAGATTTCAGGCTTATCCTGT	666	0.1490886786624104	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	651	0.14573082553938313	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	619	0.13856740554359165	No Hit
CTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTCTGCT	528	0.1181964299305596	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	25	3.8869628E-5	45.0	1
TCGCAAT	20	7.0286513E-4	45.0	27
ATTAGCG	35	1.2097007E-7	45.0	1
CGTATAT	25	3.8869628E-5	45.0	30
CGTATAG	25	3.8869628E-5	45.0	1
ATTCGTT	20	7.0286513E-4	45.0	12
TATGCGG	40	6.7993824E-9	45.0	2
TTATCGC	20	7.0286513E-4	45.0	24
TACGCGG	40	6.7993824E-9	45.0	2
TATCTCG	20	7.0286513E-4	45.0	1
CATAGCG	20	7.0286513E-4	45.0	1
TAACACG	35	1.2097007E-7	45.0	1
TCTAACG	20	7.0286513E-4	45.0	1
CGGTGTA	25	3.8869628E-5	45.0	36
CTACATT	20	7.0286513E-4	45.0	14
CATCGCG	25	3.8869628E-5	45.0	2
CGTAACG	20	7.0286513E-4	45.0	1
CCGAAAC	25	3.8869628E-5	45.0	21
TCATACG	20	7.0286513E-4	45.0	1
ACCCGAT	20	7.0286513E-4	45.0	26