SRR3554227_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554227_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	436459
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5035	1.153602056550558	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1308	0.29968450644848654	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1081	0.24767503935077523	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	872	0.19978967096565772	No Hit
GTAAAGGGGAAGAAGATTGATCAAACTGAATGAAACACACACACACACACA	744	0.17046274678721254	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	656	0.15030048641453148	No Hit
ACAGGCAGAATTTGAAACCTAAAGAACTCCCAGATTTCAGGCTTATCCTGT	643	0.14732197067765815	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	564	0.12922175966127403	No Hit
CTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTCTGCT	501	0.11478741416719555	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATAT	30	2.1623964E-6	45.000004	30
TCTAACG	35	1.2096098E-7	45.000004	1
CGACTTC	30	2.1623964E-6	45.000004	17
CGTTCTA	20	7.028474E-4	45.0	39
TATGCGG	50	2.1827873E-11	45.0	2
TCGATAG	20	7.028474E-4	45.0	1
CTGCGTA	20	7.028474E-4	45.0	35
AAACGCA	25	3.886816E-5	45.0	35
AGACGCA	20	7.028474E-4	45.0	41
ATATCGT	20	7.028474E-4	45.0	44
CGTAGTA	20	7.028474E-4	45.0	26
CAAGGCG	20	7.028474E-4	45.0	1
AGCGATA	20	7.028474E-4	45.0	35
CCGACGG	25	3.886816E-5	45.0	2
AGTTATC	40	6.7975634E-9	45.0	25
TATAGGC	20	7.028474E-4	45.0	44
CGTAACG	20	7.028474E-4	45.0	1
CGAGACA	110	0.0	45.0	22
ACGTAGA	20	7.028474E-4	45.0	45
ACGTAAA	25	3.886816E-5	45.0	20