SRR3554222_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554222_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	409982
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	10617	2.589625886014508	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1992	0.48587498963369125	No Hit
CTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGCT	1694	0.41318887170656277	TruSeq Adapter, Index 20 (95% over 22bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1627	0.39684669083032914	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	923	0.2251318350561732	No Hit
GTACGGGAACATTTACTAATTATTTTTTTAAACTTCAGTTTTACTGCATTT	729	0.17781268445931772	No Hit
AAAGAAGGAAAGTAAAAAAGCGCAATGTGTGTAAAAAAAAATTAAAATTAA	630	0.15366528286607706	No Hit
TAAGCGGGATTTACGCTTGTGATCAAATAATGATGTTAAATTCTTAAATCC	417	0.10171178246849862	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGTT	30	2.1620726E-6	45.000004	37
TAGCGGA	30	2.1620726E-6	45.000004	3
ATTACGT	30	2.1620726E-6	45.000004	21
TACGCTT	60	0.0	45.000004	12
GAACGTA	30	2.1620726E-6	45.000004	9
ACGCTTG	60	0.0	45.000004	13
TTACGTA	30	2.1620726E-6	45.000004	22
AACCTCG	30	2.1620726E-6	45.000004	13
CTACACG	30	2.1620726E-6	45.000004	1
TTCGGGA	75	0.0	45.000004	4
TTACGCT	60	0.0	45.000004	11
CTCTACT	30	2.1620726E-6	45.000004	23
CGATAAG	30	2.1620726E-6	45.000004	1
CGCTTGT	60	0.0	45.000004	14
TAATCCG	30	2.1620726E-6	45.000004	1
TGATCGA	25	3.8864007E-5	45.0	33
GCCCCAA	25	3.8864007E-5	45.0	29
CGGGTAT	45	3.8380676E-10	45.0	6
CGTATCT	20	7.0279714E-4	45.0	7
GATCGGC	25	3.8864007E-5	45.0	23