SRR3554221_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554221_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	399456
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	10222	2.558980213089802	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1868	0.46763598493951775	No Hit
CTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGCT	1825	0.45687134502923976	TruSeq Adapter, Index 20 (95% over 22bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1540	0.3855243130657694	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	930	0.23281663061763996	No Hit
GTACGGGAACATTTACTAATTATTTTTTTAAACTTCAGTTTTACTGCATTT	696	0.1742369622686854	No Hit
AAAGAAGGAAAGTAAAAAAGCGCAATGTGTGTAAAAAAAAATTAAAATTAA	612	0.1532083633741889	No Hit
AAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	444	0.11115116558519586	No Hit
TAAGCGGGATTTACGCTTGTGATCAAATAATGATGTTAAATTCTTAAATCC	407	0.10188856845309621	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAT	25	3.88622E-5	45.0	6
AGCGTAA	25	3.88622E-5	45.0	45
ACTATCC	35	1.2092642E-7	45.0	26
GTCGCGG	40	6.7957444E-9	45.0	2
GTACCGG	40	6.7957444E-9	45.0	2
TCCGCAA	20	7.027754E-4	45.0	1
TTTACGG	55	1.8189894E-12	45.0	2
AAATACG	25	3.88622E-5	45.0	1
GCGGTGT	20	7.027754E-4	45.0	9
GCGGTGC	20	7.027754E-4	45.0	25
CTATCCG	20	7.027754E-4	45.0	1
GCAACTC	25	3.88622E-5	45.0	9
TAGCGTA	20	7.027754E-4	45.0	44
TAGCGAG	20	7.027754E-4	45.0	1
GGCAACG	20	7.027754E-4	45.0	1
GGCCGCT	20	7.027754E-4	45.0	21
ACCGATA	20	7.027754E-4	45.0	32
CCGTGCG	20	7.027754E-4	45.0	1
TGAACCG	20	7.027754E-4	45.0	45
ATAGACG	25	3.88622E-5	45.0	1