SRR3554217_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554217_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	490647
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4013	0.8178996304879067	No Hit
CTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCTGCT	1160	0.23642251965262195	Illumina Single End Adapter 2 (95% over 21bp)
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1131	0.2305119566613064	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	812	0.16549576375683536	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	690	0.14063063668992168	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	583	0.11882269737713673	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	575	0.1171921972416014	No Hit
ACAGGCAGAATTTGAAACCTAAAGAACTCCCAGATTTCAGGCTTATCCTGT	574	0.11698838472465947	No Hit
AAACCAGGGAAAGAAGTGGGGTTTTTTTGTTTTTTGTTTTTTTAATTTTGT	526	0.10720538391144753	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGGGTC	55	1.8189894E-12	45.000004	5
CGAATAT	85	0.0	45.000004	13
GTAACGG	75	0.0	45.000004	2
CCACACG	55	1.8189894E-12	45.000004	1
ATTTACG	25	3.8875252E-5	45.0	1
AACGTCG	25	3.8875252E-5	45.0	1
AGCGTAA	20	7.02933E-4	45.0	25
CTCGTAA	20	7.02933E-4	45.0	33
AGATACG	35	1.2100281E-7	45.0	1
CCTAGCG	20	7.02933E-4	45.0	1
TTTCGCG	20	7.02933E-4	45.0	1
ATTACGG	25	3.8875252E-5	45.0	2
ACCGACG	20	7.02933E-4	45.0	1
TACGGGT	35	1.2100281E-7	45.0	4
CCGTCAT	20	7.02933E-4	45.0	17
CGTTATG	20	7.02933E-4	45.0	40
ACGATAC	20	7.02933E-4	45.0	45
GTTCGGA	20	7.02933E-4	45.0	20
CGTAGCG	45	3.8380676E-10	45.0	1
GTCGTTT	35	1.2100281E-7	45.0	9