SRR3554216_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554216_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1115941
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5806	0.5202784018151497	No Hit
CTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGCT	1897	0.16999106583591786	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1117	0.10009489749010028	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATACGT	35	1.2118835E-7	45.0	22
TCGCATA	20	7.0332E-4	45.0	24
ATAGGCG	20	7.0332E-4	45.0	1
ATTACGT	20	7.0332E-4	45.0	25
TACGGAC	25	3.8907332E-5	45.0	3
CGTAGCG	20	7.0332E-4	45.0	1
TACTCGA	20	7.0332E-4	45.0	35
CACGTAA	20	7.0332E-4	45.0	45
TAAGACG	50	2.1827873E-11	45.0	1
ATCGATA	20	7.0332E-4	45.0	38
TCTAACG	30	2.165445E-6	44.999996	1
CGATAGG	100	0.0	42.75	2
AATACCG	95	0.0	42.63158	1
TCATGCG	55	6.184564E-11	40.909092	1
CGTACAT	55	6.184564E-11	40.909092	35
TATTACG	50	1.0822987E-9	40.5	1
CATAACG	50	1.0822987E-9	40.5	1
TTACCGG	100	0.0	40.5	2
TCAACCG	50	1.0822987E-9	40.5	1
TATACGG	130	0.0	39.80769	2