SRR3554215_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554215_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1088467
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5546	0.5095239451448689	No Hit
CTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGCT	1967	0.18071287416155016	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACGT	25	3.8906684E-5	45.000004	37
TAGAACG	20	7.0331205E-4	45.000004	1
GTCTACG	20	7.0331205E-4	45.000004	1
TCGATTA	20	7.0331205E-4	45.000004	32
TCGATCA	45	3.8562575E-10	45.000004	17
CATAGCG	25	3.8906684E-5	45.000004	1
CGTACAC	25	3.8906684E-5	45.000004	1
TATAGCG	30	2.165394E-6	45.000004	1
CGTAACG	60	0.0	45.000004	1
CGTTTAG	25	3.8906684E-5	45.000004	23
TGCGTAG	45	3.8562575E-10	45.000004	1
GCTACGA	70	0.0	45.0	9
CTATGCG	70	0.0	41.785713	1
TATTACG	65	0.0	41.538464	1
TAGGCGG	115	0.0	41.086956	2
CCATGCG	55	6.184564E-11	40.909092	1
CGCGTAG	50	1.0822987E-9	40.500004	1
TCAAACG	100	0.0	40.500004	1
TCGACGG	45	1.9281288E-8	40.000004	2
CGTCAAT	45	1.9281288E-8	40.000004	14