SRR3554214_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554214_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	587890
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4642	0.7896034972528875	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2283	0.3883379543792206	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	936	0.1592134583000221	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	908	0.15445066253891032	No Hit
ACAGGCAGAATTTGAAACCTAAAGAACTCCCAGATTTCAGGCTTATCCTGT	816	0.13880147646668595	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	768	0.13063668373335147	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	697	0.1185595944819609	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	590	0.1003589106805695	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAGCG	30	2.1636843E-6	45.000004	1
TAGCACG	45	3.8380676E-10	45.000004	1
CGTACGG	45	3.8380676E-10	45.000004	2
AATTTCG	25	3.8884733E-5	45.0	26
ACGTTAC	20	7.030471E-4	45.0	35
ACCGCGA	20	7.030471E-4	45.0	12
ATATGCG	20	7.030471E-4	45.0	1
TACGGGT	50	2.1827873E-11	45.0	4
CGCGACT	20	7.030471E-4	45.0	14
TATGCGG	50	2.1827873E-11	45.0	2
ATCGTAC	25	3.8884733E-5	45.0	8
CATCGTA	25	3.8884733E-5	45.0	7
TTTGCGC	20	7.030471E-4	45.0	13
CCGCGAC	20	7.030471E-4	45.0	13
CGATACG	25	3.8884733E-5	45.0	1
GCGTATG	20	7.030471E-4	45.0	1
TACACCG	25	3.8884733E-5	45.0	1
TCAAACG	50	2.1827873E-11	45.0	1
CGAATAT	165	0.0	43.636368	13
ATACACG	85	0.0	42.352943	1