SRR3554212_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554212_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	461088
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	7917	1.7170258171975847	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1452	0.3149073495731834	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1360	0.29495454229995144	No Hit
CTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTGCT	1031	0.22360156846415435	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	759	0.16461066000416405	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGGCG	20	7.0288865E-4	45.0	24
TAATACG	50	2.1827873E-11	45.0	1
TAAAGCG	25	3.8871593E-5	45.0	1
CGAAACG	35	1.2098099E-7	45.0	1
CCGATAG	20	7.0288865E-4	45.0	1
ATCAGCG	35	1.2098099E-7	45.0	1
CGATTTA	20	7.0288865E-4	45.0	40
TAACGTC	45	3.8380676E-10	45.0	32
CCTGTCG	25	3.8871593E-5	45.0	31
CATTACG	20	7.0288865E-4	45.0	11
ATATCCG	40	6.7993824E-9	45.0	1
TACGCGG	40	6.7993824E-9	45.0	2
GCACACG	40	6.7993824E-9	45.0	1
TCGTGAG	20	7.0288865E-4	45.0	2
CTACGTC	25	3.8871593E-5	45.0	10
CTAAACG	25	3.8871593E-5	45.0	1
ATGACCG	20	7.0288865E-4	45.0	1
CGTACGA	20	7.0288865E-4	45.0	41
GTATCAC	20	7.0288865E-4	45.0	9
TGCTCGT	25	3.8871593E-5	45.0	37