SRR3554207_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554207_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	234786
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5658	2.4098540798855126	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1012	0.4310308110364332	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	920	0.39184619185130287	No Hit
CTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTGCT	874	0.3722538822587378	Illumina Single End Adapter 2 (95% over 21bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	518	0.2206264428032336	No Hit
AATCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCT	347	0.1477941614917414	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGT	328	0.13970168579046452	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCC	326	0.13884984624296168	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	288	0.12266489484040786	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGTCACG	20	7.0218084E-4	45.0	39
AGGTACC	20	7.0218084E-4	45.0	6
AACCGCG	25	3.8812934E-5	45.0	1
AGTCCTA	20	7.0218084E-4	45.0	12
GTACCTA	20	7.0218084E-4	45.0	28
GCCCATT	25	3.8812934E-5	45.0	21
CTCACGG	40	6.7757355E-9	45.0	2
GGTACCA	20	7.0218084E-4	45.0	7
CGAACAG	20	7.0218084E-4	45.0	1
GCGACCG	20	7.0218084E-4	45.0	32
GATAACT	20	7.0218084E-4	45.0	9
GACACGT	20	7.0218084E-4	45.0	18
TAGACCC	20	7.0218084E-4	45.0	44
GTCCTAC	20	7.0218084E-4	45.0	13
CGTGACG	25	3.8812934E-5	45.0	1
GACCGAT	35	1.2064083E-7	45.0	9
GATCACT	25	3.8812934E-5	45.0	9
AGGGTGC	20	7.0218084E-4	45.0	6
AGGCGGT	20	7.0218084E-4	45.0	6
CCTCGGG	50	2.1827873E-11	45.0	3