SRR3554204_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554204_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	283423
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	9884	3.487366939168663	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1975	0.6968382947043817	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGT	1967	0.6940156585739337	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCC	1889	0.6664949563020643	No Hit
AATCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCT	1783	0.6290950275736267	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1654	0.5835800199701506	No Hit
CTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCTGCT	889	0.3136654399960483	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	831	0.2932013280502994	No Hit
AATGACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTT	538	0.18982227977263666	No Hit
AATGATCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCT	469	0.16547704314752154	No Hit
ATACGTGCGGGGTAACTTATTTATTTATTTATTTTTTGATTTCACAGTAGT	416	0.14677707878330268	No Hit
AACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCTG	323	0.1139639337668432	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTGCTCATTC	320	0.11290544521792514	No Hit
GGCTCTGGGGTCTTTTTTTTAAAAATTTTTATTCATTAAGGTGCCTCGTTT	310	0.109377150054865	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTAT	309	0.10902432053855897	No Hit
AAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	299	0.10549602537549882	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGGA	20	7.0242834E-4	45.0	44
TATTTCG	25	3.8833445E-5	45.0	45
GTTTGCG	20	7.0242834E-4	45.0	39
GATACTC	20	7.0242834E-4	45.0	15
AGTCCGC	20	7.0242834E-4	45.0	39
AGTCCCC	40	6.7830115E-9	45.0	28
AAATCGC	20	7.0242834E-4	45.0	8
CGAACAG	20	7.0242834E-4	45.0	1
TCCGCGG	20	7.0242834E-4	45.0	2
CGTATAT	20	7.0242834E-4	45.0	18
AGTCACG	40	6.7830115E-9	45.0	1
GACACGG	25	3.8833445E-5	45.0	2
TCACACG	45	3.8198777E-10	45.0	1
ACACCCG	20	7.0242834E-4	45.0	1
GCTATGC	20	7.0242834E-4	45.0	43
GACCGGT	25	3.8833445E-5	45.0	18
TTCACGG	20	7.0242834E-4	45.0	2
TCCCTCC	20	7.0242834E-4	45.0	15
AGGACCG	25	3.8833445E-5	45.0	1
CGCGCAG	25	3.8833445E-5	45.0	1