SRR3554203_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554203_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	276874
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	9505	3.4329695095964228	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1838	0.6638398693990769	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGT	1804	0.651559915340552	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCC	1795	0.6483093392662367	No Hit
AATCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCT	1682	0.60749655077761	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1563	0.5645167115727732	No Hit
CTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCTGCT	947	0.34203283804185297	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	819	0.2958024227627007	No Hit
AATGACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTT	506	0.18275461040039873	No Hit
AATGATCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCT	466	0.16830760562566366	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTGCTCATTC	397	0.14338652238924565	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTAT	364	0.13146774345008921	No Hit
ATACGTGCGGGGTAACTTATTTATTTATTTATTTTTTGATTTCACAGTAGT	356	0.1285783424951422	No Hit
AAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	349	0.12605011665956356	No Hit
AACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCTG	337	0.12171601522714304	No Hit
GGCTCTGGGGTCTTTTTTTTAAAAATTTTTATTCATTAAGGTGCCTCGTTT	286	0.1032960841393558	No Hit
CAAGGGGGGATCCTATTTACACATGAGTTTTTTTCCCACAAATATTTGTGG	281	0.10149020854251392	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCTA	20	7.023999E-4	45.000004	15
CTTGTCG	20	7.023999E-4	45.000004	11
TTTAGCG	20	7.023999E-4	45.000004	1
AACGTGT	20	7.023999E-4	45.000004	32
GATACAG	20	7.023999E-4	45.000004	1
TCTTGCG	20	7.023999E-4	45.000004	1
ACCGGTA	20	7.023999E-4	45.000004	19
TACCCCG	20	7.023999E-4	45.000004	1
TACCAGT	20	7.023999E-4	45.000004	16
TCCGATA	20	7.023999E-4	45.000004	31
CCGATAT	20	7.023999E-4	45.000004	32
CCGGCAG	20	7.023999E-4	45.000004	1
CATTGCG	20	7.023999E-4	45.000004	1
GACGTAA	20	7.023999E-4	45.000004	9
GACCGGT	20	7.023999E-4	45.000004	18
TTGTCGC	20	7.023999E-4	45.000004	12
GATCCAC	20	7.023999E-4	45.000004	42
GTTAGGT	20	7.023999E-4	45.000004	17
CGCTGGT	20	7.023999E-4	45.000004	3
TGCGGGC	20	7.023999E-4	45.000004	4