##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3554203_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 276874 Sequences flagged as poor quality 0 Sequence length 51 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.12536027218157 33.0 31.0 34.0 30.0 34.0 2 32.30427559106308 34.0 31.0 34.0 30.0 34.0 3 32.39338832826484 34.0 31.0 34.0 30.0 34.0 4 35.919143726027 37.0 35.0 37.0 35.0 37.0 5 35.75150429437217 37.0 35.0 37.0 35.0 37.0 6 35.72570916734688 37.0 35.0 37.0 33.0 37.0 7 35.580303676040366 37.0 35.0 37.0 35.0 37.0 8 35.77942674285054 37.0 35.0 37.0 35.0 37.0 9 37.43374603610307 39.0 37.0 39.0 35.0 39.0 10 37.06794787520677 39.0 37.0 39.0 33.0 39.0 11 37.04098254079473 39.0 37.0 39.0 33.0 39.0 12 37.00957836416565 39.0 37.0 39.0 33.0 39.0 13 37.010102068088734 39.0 37.0 39.0 33.0 39.0 14 38.18837449525777 40.0 38.0 41.0 33.0 41.0 15 38.2321019669597 40.0 38.0 41.0 33.0 41.0 16 38.165400145914745 40.0 37.0 41.0 33.0 41.0 17 38.059785317509046 40.0 37.0 41.0 33.0 41.0 18 37.888234359311454 40.0 37.0 41.0 33.0 41.0 19 37.693900474584105 40.0 36.0 41.0 33.0 41.0 20 37.67447647666447 39.0 36.0 41.0 33.0 41.0 21 37.62694944270679 39.0 36.0 41.0 33.0 41.0 22 37.580401193322594 39.0 36.0 41.0 33.0 41.0 23 37.39660639857841 39.0 35.0 41.0 32.0 41.0 24 37.384655113878516 39.0 35.0 41.0 32.0 41.0 25 37.33357411674625 39.0 35.0 41.0 32.0 41.0 26 37.245884409514794 39.0 35.0 41.0 32.0 41.0 27 37.20446123507444 39.0 35.0 41.0 32.0 41.0 28 37.073954217441866 39.0 35.0 41.0 32.0 41.0 29 36.93659209604369 39.0 35.0 41.0 31.0 41.0 30 36.87910024054263 39.0 35.0 41.0 31.0 41.0 31 36.71646669604225 39.0 35.0 41.0 31.0 41.0 32 36.61206902778881 39.0 35.0 41.0 31.0 41.0 33 36.616934056646706 39.0 35.0 41.0 31.0 41.0 34 36.38764564386688 39.0 35.0 41.0 30.0 41.0 35 36.396216329449494 39.0 35.0 41.0 30.0 41.0 36 36.26881902959469 38.0 35.0 40.0 30.0 41.0 37 36.22738863165194 38.0 35.0 40.0 30.0 41.0 38 36.159603285248885 38.0 35.0 40.0 30.0 41.0 39 36.00925691830941 38.0 35.0 40.0 30.0 41.0 40 35.93018484942609 38.0 35.0 40.0 29.0 41.0 41 35.83907842556542 38.0 35.0 40.0 29.0 41.0 42 35.78459154705751 38.0 35.0 40.0 29.0 41.0 43 35.68099568756907 38.0 35.0 40.0 29.0 41.0 44 35.5941222361074 38.0 35.0 40.0 28.0 41.0 45 35.423452545201066 38.0 34.0 40.0 28.0 41.0 46 35.16129358480753 37.0 34.0 40.0 26.0 41.0 47 35.074344286570785 37.0 34.0 40.0 26.0 41.0 48 34.98425637654673 37.0 34.0 40.0 26.0 41.0 49 34.90318339750211 37.0 34.0 40.0 26.0 41.0 50 34.799623655525615 37.0 34.0 40.0 26.0 41.0 51 33.76985921393847 36.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 1.0 13 7.0 14 7.0 15 13.0 16 31.0 17 57.0 18 117.0 19 216.0 20 436.0 21 732.0 22 1006.0 23 1395.0 24 1749.0 25 1935.0 26 2283.0 27 2647.0 28 3190.0 29 4232.0 30 5471.0 31 6907.0 32 8989.0 33 11952.0 34 17141.0 35 27111.0 36 26381.0 37 33602.0 38 50950.0 39 68287.0 40 27.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.015241590037345 37.97864732694294 17.789319329370038 24.216791753649673 2 20.79032339620188 37.90894052890484 18.368644220836917 22.93209185405636 3 18.534423600627 34.57168242594104 22.441977217073468 24.45191675635849 4 22.11511373404509 34.10829474779141 19.26183029103491 24.514761227128584 5 17.493516906607336 37.90677347818863 18.398260580625124 26.201449034578907 6 20.147070508606806 37.450970477545745 21.229151166234463 21.172807847612994 7 77.31061782615919 12.849888396888115 5.567875640182899 4.271618136769794 8 77.83612762484017 10.593266251074496 4.867918258846984 6.70268786523834 9 71.83267479069902 15.142266879519203 8.087433272896696 4.937625056885081 10 29.378706559662515 45.05840201680187 13.19372711052681 12.369164313008806 11 20.7729869904722 32.411494036998775 30.183043550495892 16.632475422033128 12 22.079718572346987 30.878666830399386 30.31523364418472 16.726380953068904 13 21.187616027507097 33.57881202279737 28.069446751952153 17.164125197743378 14 17.580921285494487 33.846081611129975 28.600735352543033 19.97226175083251 15 16.21531815916265 34.57601652737346 29.121911049791606 20.086754263672287 16 17.870583731227924 36.3230205797583 28.553782587025147 17.252613101988633 17 17.08611137195981 35.584417460649966 27.459783150458332 19.86968801693189 18 19.61361485729971 33.6835528074142 27.146283146846578 19.556549188439508 19 18.756185123919185 36.096563779914334 27.808317140648814 17.33893395551767 20 21.884322832768696 36.35299811466587 26.274045233571954 15.488633818993478 21 18.942912660632636 35.4081640023982 27.786285458367345 17.86263787860182 22 19.240882134111544 33.85366628863671 27.125696165042584 19.779755412209163 23 17.879974284331503 36.817469318173615 26.677839017025796 18.624717380469093 24 15.665609627483981 37.38343073022386 28.78493466342091 18.166024978871256 25 17.34904685885999 37.087989482580525 26.175083250865015 19.387880407694475 26 19.777949536612322 36.00229707375918 25.81535283197411 18.404400557654384 27 17.93631760295297 35.46450732101967 26.15160686810607 20.447568207921293 28 17.433561836792187 36.37394627158924 26.28524166227237 19.9072502293462 29 17.146788792013695 36.94713118602685 27.833960574123967 18.072119447835476 30 19.38462983162016 34.32644451988992 26.77174454806157 19.517181100428356 31 19.726662669662012 36.09584142967559 25.042438076525787 19.135057824136613 32 19.23835390827597 32.87740994098399 28.434594797633583 19.44964135310647 33 17.456315869312395 34.03931029999205 25.38122033849332 23.123153492202228 34 16.343174151419056 34.42540650259685 29.691845388154903 19.53957395782919 35 16.4511655121102 33.803824122163874 29.676314858022064 20.068695507703865 36 16.275273228977802 37.78289041224528 27.827459421975338 18.114376936801577 37 18.823724871241073 34.99100673952773 26.700593049546 19.4846753396852 38 17.129452386284015 35.102248676293186 28.389086732593167 19.379212204829635 39 15.983804907647523 34.53195316281052 27.999378778794686 21.484863150747273 40 19.54426923438098 33.758677232242825 28.02899513858289 18.6680583947933 41 16.077710438683297 34.57890592832841 29.93961152004161 19.403772112946683 42 19.39546508520121 33.61745776056979 27.651567138842942 19.33551001538606 43 18.21875654629904 33.7897382925085 28.14746057773572 19.844044583456736 44 19.962148847490194 32.839125378330934 26.12162933319849 21.077096440980373 45 20.534250236569704 33.01140591026965 26.20253255993701 20.251811293223632 46 15.5706205710901 34.09204186741984 29.953697349696974 20.38364021179309 47 18.064173595209372 34.64716802588903 27.196486488438786 20.092171890462808 48 18.108236959772313 34.15163576211562 29.16452971387707 18.575597564234993 49 19.187789391564394 33.519940478340324 27.875856887970702 19.416413242124577 50 17.278617710583152 33.9017025795127 27.36045999263203 21.459219717272116 51 17.17243222548885 32.05248596834661 29.009585587668035 21.765496218496498 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 10713.0 1 7870.5 2 5028.0 3 3168.0 4 1308.0 5 1091.5 6 875.0 7 971.0 8 1067.0 9 1329.0 10 1591.0 11 1962.0 12 2333.0 13 2755.0 14 3177.0 15 3078.0 16 2979.0 17 2902.0 18 2825.0 19 2692.0 20 2559.0 21 2350.0 22 2141.0 23 2530.0 24 2919.0 25 3017.0 26 3767.0 27 4419.0 28 5475.0 29 6531.0 30 6249.0 31 5967.0 32 7289.5 33 8612.0 34 9769.5 35 10927.0 36 11733.0 37 12539.0 38 13202.0 39 13865.0 40 13456.0 41 13047.0 42 14026.5 43 15006.0 44 18250.0 45 21494.0 46 20780.5 47 20067.0 48 20548.5 49 21030.0 50 19728.5 51 18427.0 52 17057.5 53 15688.0 54 13589.5 55 11491.0 56 10216.5 57 8942.0 58 7882.0 59 6822.0 60 6223.0 61 5624.0 62 5145.5 63 4667.0 64 3898.5 65 3130.0 66 2501.5 67 1873.0 68 1689.5 69 1506.0 70 1176.0 71 846.0 72 735.5 73 625.0 74 559.5 75 379.0 76 264.0 77 193.0 78 122.0 79 142.0 80 162.0 81 98.5 82 35.0 83 24.0 84 13.0 85 9.0 86 5.0 87 2.5 88 0.0 89 1.0 90 2.0 91 2.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 276874.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.55893294422734 #Duplication Level Percentage of deduplicated Percentage of total 1 76.27594970735939 22.546356826570932 2 8.470082232621792 5.007331854923178 3 3.4371525274617856 3.0479568323497332 4 2.029545093535025 2.3996474930834966 5 1.46747962512677 2.1688565918071037 6 1.0129397245879204 1.7964850437383069 7 0.7612321452572671 1.5750846955654918 8 0.625603303967449 1.4793732889328721 9 0.4826431739592625 1.2839775493545802 >10 4.575946041715033 28.436039498111054 >50 0.6219376596082649 12.784154525163071 >100 0.22849183172248627 10.085454033242558 >500 0.0036656443591842718 0.8205898712049525 >1k 0.006109407265307121 3.1357223863562487 >5k 0.0012218814530614238 3.4329695095964228 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 9505 3.4329695095964228 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1838 0.6638398693990769 No Hit AATGATACCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGT 1804 0.651559915340552 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCC 1795 0.6483093392662367 No Hit AATCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCT 1682 0.60749655077761 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1563 0.5645167115727732 No Hit CTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCTGCT 947 0.34203283804185297 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 819 0.2958024227627007 No Hit AATGACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTT 506 0.18275461040039873 No Hit AATGATCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCT 466 0.16830760562566366 No Hit AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTGCTCATTC 397 0.14338652238924565 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTAT 364 0.13146774345008921 No Hit ATACGTGCGGGGTAACTTATTTATTTATTTATTTTTTGATTTCACAGTAGT 356 0.1285783424951422 No Hit AAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 349 0.12605011665956356 No Hit AACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCTG 337 0.12171601522714304 No Hit GGCTCTGGGGTCTTTTTTTTAAAAATTTTTATTCATTAAGGTGCCTCGTTT 286 0.1032960841393558 No Hit CAAGGGGGGATCCTATTTACACATGAGTTTTTTTCCCACAAATATTTGTGG 281 0.10149020854251392 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4037937834538454 0.0 2 0.0 0.0 0.0 0.5540426331110903 0.0 3 0.0 0.0 0.0 0.8512897563512645 0.0 4 0.0 0.0 0.0 2.179691845388155 0.0 5 0.0 0.0 0.0 2.353055902684976 0.0 6 0.0 0.0 0.0 3.1411400131467744 0.0 7 0.0 0.0 0.0 3.749358914163121 0.0 8 0.0 0.0 0.0 4.200466638254224 0.0 9 0.0 0.0 0.0 5.522367575142484 0.0 10 0.0 0.0 0.0 6.6997984642833925 0.0 11 0.0 0.0 0.0 8.298720717727198 0.0 12 0.0 0.0 0.0 8.78341772791956 0.0 13 0.0 0.0 0.0 9.043102638745422 0.0 14 0.0 0.0 0.0 9.382968426071065 0.0 15 0.0 0.0 0.0 9.596061746498407 0.0 16 0.0 0.0 0.0 9.97348974623836 0.0 17 0.0 0.0 0.0 10.415568092345255 0.0 18 0.0 0.0 0.0 11.20401337792642 0.0 19 0.0 0.0 0.0 11.479228818885124 0.0 20 0.0 0.0 0.0 11.802480550719823 0.0 21 0.0 0.0 0.0 12.12789933327073 0.0 22 0.0 0.0 0.0 12.467765120596372 0.0 23 0.0 0.0 0.0 12.798962705057175 0.0 24 0.0 0.0 0.0 13.016390126916937 0.0 25 0.0 0.0 0.0 13.21359174209207 0.0 26 0.0 0.0 0.0 13.404653380237942 0.0 27 0.0 0.0 0.0 13.635444281514335 0.0 28 0.0 0.0 0.0 13.867318708148833 0.0 29 0.0 0.0 0.0 14.117613065871119 0.0 30 0.0 0.0 0.0 14.466147056061603 0.0 31 0.0 0.0 0.0 14.710662611873992 0.0 32 0.0 0.0 0.0 14.943259388747228 0.0 33 0.0 0.0 0.0 15.163937386681306 0.0 34 3.6117511936837693E-4 0.0 0.0 15.38533773485412 0.0 35 3.6117511936837693E-4 0.0 0.0 15.623352138517882 0.0 36 3.6117511936837693E-4 0.0 0.0 15.874007671359536 0.0 37 3.6117511936837693E-4 0.0 0.0 16.112022075023297 0.0 38 3.6117511936837693E-4 0.0 0.0 16.363761133223054 0.0 39 3.6117511936837693E-4 0.0 0.0 16.67870583731228 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCCTA 20 7.023999E-4 45.000004 15 CTTGTCG 20 7.023999E-4 45.000004 11 TTTAGCG 20 7.023999E-4 45.000004 1 AACGTGT 20 7.023999E-4 45.000004 32 GATACAG 20 7.023999E-4 45.000004 1 TCTTGCG 20 7.023999E-4 45.000004 1 ACCGGTA 20 7.023999E-4 45.000004 19 TACCCCG 20 7.023999E-4 45.000004 1 TACCAGT 20 7.023999E-4 45.000004 16 TCCGATA 20 7.023999E-4 45.000004 31 CCGATAT 20 7.023999E-4 45.000004 32 CCGGCAG 20 7.023999E-4 45.000004 1 CATTGCG 20 7.023999E-4 45.000004 1 GACGTAA 20 7.023999E-4 45.000004 9 GACCGGT 20 7.023999E-4 45.000004 18 TTGTCGC 20 7.023999E-4 45.000004 12 GATCCAC 20 7.023999E-4 45.000004 42 GTTAGGT 20 7.023999E-4 45.000004 17 CGCTGGT 20 7.023999E-4 45.000004 3 TGCGGGC 20 7.023999E-4 45.000004 4 >>END_MODULE