SRR3554201_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554201_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	724650
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4559	0.629131304767819	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2354	0.3248464776098806	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	918	0.12668184640861105	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	885	0.12212792382529497	No Hit
CACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCAA	790	0.10901814669150624	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	784	0.10819016076726695	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAGGCG	35	1.2111013E-7	45.000004	1
CGAGTAT	20	7.031558E-4	45.000004	37
TTCGTAC	20	7.031558E-4	45.000004	33
ATCGTTA	20	7.031558E-4	45.000004	40
AATTGCG	40	6.8084773E-9	45.000004	1
CGCTATA	20	7.031558E-4	45.000004	33
AAACCGC	20	7.031558E-4	45.000004	43
CGTGTTA	20	7.031558E-4	45.000004	18
ACCCGTC	20	7.031558E-4	45.000004	35
TTGCACG	20	7.031558E-4	45.000004	1
TATACGA	20	7.031558E-4	45.000004	34
TAAGCGA	20	7.031558E-4	45.000004	23
GCCGTTT	35	1.2111013E-7	45.000004	9
CGCTTGT	20	7.031558E-4	45.000004	15
TGCGTGT	20	7.031558E-4	45.000004	43
AGTAACG	40	6.8084773E-9	45.000004	1
CGGAATA	25	3.889374E-5	45.0	32
ACACGAA	25	3.889374E-5	45.0	26
TAACGTC	25	3.889374E-5	45.0	32
TATGCGG	45	3.8380676E-10	45.0	2