SRR3554199_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554199_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	335900
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	7206	2.145281333730277	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1658	0.4935992855016374	No Hit
CTGTCTCTTATACACATCTGACGCGTGACCTATCGTATGCCGTCTTCTGCT	1450	0.4316760940756177	TruSeq Adapter, Index 13 (95% over 22bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1048	0.3119976183387913	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	702	0.20899077106281633	No Hit
GAGCTAGCAAAAGCCGTAGCCTCTTCGTGTGTTGTTTCTGTTGCTGTTGCT	455	0.135456981244418	No Hit
ACATGTTACATGCTGTAGTTTAACATTTATAATTTTGTTCCCCTGTTTTGA	357	0.10628163143792796	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTC	20	7.0261495E-4	45.000004	26
CGGGTTA	40	6.7902874E-9	45.000004	6
TTTAGCG	40	6.7902874E-9	45.000004	1
CGGCGAA	20	7.0261495E-4	45.000004	17
CGAACGG	55	1.8189894E-12	45.000004	2
TCCGCGG	20	7.0261495E-4	45.000004	2
CGAAACG	20	7.0261495E-4	45.000004	1
ACGTTCC	20	7.0261495E-4	45.000004	27
GCGAACA	20	7.0261495E-4	45.000004	19
GCAACCG	20	7.0261495E-4	45.000004	1
TAGCGAG	20	7.0261495E-4	45.000004	1
TAAACGG	55	1.8189894E-12	45.000004	2
CCTACTC	20	7.0261495E-4	45.000004	19
ATTAACG	20	7.0261495E-4	45.000004	1
ATTCGAA	20	7.0261495E-4	45.000004	22
GCGTTGG	20	7.0261495E-4	45.000004	1
CATTCCG	20	7.0261495E-4	45.000004	1
CGTTCAT	20	7.0261495E-4	45.000004	17
TCGGCTA	40	6.7902874E-9	45.000004	11
GCCGCTC	20	7.0261495E-4	45.000004	20