SRR3554198_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554198_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	422879
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6081	1.4379999952705147	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1092	0.25822989554931786	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1075	0.2542098330728175	No Hit
CTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGCT	901	0.2130633112545196	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	542	0.12816905072136475	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAG	20	7.028224E-4	45.0	1
ACAACGT	20	7.028224E-4	45.0	31
TATCACG	20	7.028224E-4	45.0	1
AAATCCG	20	7.028224E-4	45.0	1
AGTTTCG	20	7.028224E-4	45.0	34
CGACGCT	20	7.028224E-4	45.0	18
TAGGTAC	20	7.028224E-4	45.0	30
GACCGTA	35	1.2095006E-7	45.0	9
GACCGAA	25	3.88661E-5	45.0	28
CGACCAG	20	7.028224E-4	45.0	1
TCCTCGA	20	7.028224E-4	45.0	44
CACGATT	20	7.028224E-4	45.0	41
ACGGGCC	85	0.0	45.0	5
CGTTATC	20	7.028224E-4	45.0	44
GTTACGG	35	1.2095006E-7	45.0	2
CCGTATA	20	7.028224E-4	45.0	31
ACGATGG	20	7.028224E-4	45.0	2
ACTAGGT	20	7.028224E-4	45.0	19
TACGCGG	55	1.8189894E-12	45.0	2
CGGATTA	20	7.028224E-4	45.0	6