SRR3554197_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554197_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	411320
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5864	1.4256539920256734	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1147	0.2788583098317612	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1069	0.2598949722843528	No Hit
CTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGCT	962	0.23388116308470291	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	514	0.12496353204317805	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGCG	20	7.0279976E-4	45.000004	1
ATTTACG	20	7.0279976E-4	45.000004	1
AACGTTG	20	7.0279976E-4	45.000004	17
CTTCGAC	20	7.0279976E-4	45.000004	34
CGAACCG	20	7.0279976E-4	45.000004	1
TTGGACC	45	3.8380676E-10	45.000004	27
CGAGTAT	20	7.0279976E-4	45.000004	24
CGACGTA	20	7.0279976E-4	45.000004	16
CATGCGA	35	1.2093915E-7	45.000004	45
CGACGAG	20	7.0279976E-4	45.000004	39
TCCGATC	20	7.0279976E-4	45.000004	15
TCATTCG	20	7.0279976E-4	45.000004	33
TCTTCGA	20	7.0279976E-4	45.000004	33
CGTTGCG	20	7.0279976E-4	45.000004	1
TAACCCG	20	7.0279976E-4	45.000004	1
CAAATCG	20	7.0279976E-4	45.000004	14
AACTCGA	40	6.7975634E-9	45.000004	12
ACTCCCG	35	1.2093915E-7	45.000004	1
TGAATCG	20	7.0279976E-4	45.000004	17
CGGTAAG	20	7.0279976E-4	45.000004	1