SRR3554196_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554196_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	418522
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6637	1.58581866664118	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1328	0.31730709496752857	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1025	0.24490946712478673	No Hit
CTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCTGCT	876	0.20930799336713485	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	637	0.1522022737155992	No Hit
GAGCACGGGGTTTCACAAGTGAGAGGTTGGTTGAAAGATAAATTTAGAGAT	590	0.14097227863768214	No Hit
AGCACTGGGGATTTTTTTTTAAAGCAAAACTATTTATTGACTTTCTTCATC	532	0.1271139868394015	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCATAC	20	7.028139E-4	45.000004	40
TCGCATG	20	7.028139E-4	45.000004	1
ACCGGTA	40	6.7975634E-9	45.000004	43
CGAACCG	20	7.028139E-4	45.000004	1
CGAGTTA	20	7.028139E-4	45.000004	27
GTCGAGT	20	7.028139E-4	45.000004	25
GATAACG	40	6.7975634E-9	45.000004	1
TTAGCGA	20	7.028139E-4	45.000004	38
GCGCGAC	20	7.028139E-4	45.000004	9
CGGTTAG	20	7.028139E-4	45.000004	1
TAGCGAT	20	7.028139E-4	45.000004	39
GGCAACG	20	7.028139E-4	45.000004	1
CGACCCG	20	7.028139E-4	45.000004	32
ACTTCCG	20	7.028139E-4	45.000004	1
GATTTCG	20	7.028139E-4	45.000004	9
AAGCGAC	20	7.028139E-4	45.000004	36
CGCGAAG	20	7.028139E-4	45.000004	1
TCGATAG	20	7.028139E-4	45.000004	44
CCTCGCG	20	7.028139E-4	45.000004	1
ATCGTGT	20	7.028139E-4	45.000004	8