SRR3554194_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554194_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	492357
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6909	1.4032500807341015	No Hit
CTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTGCT	2481	0.50390265599961	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1319	0.2678950436370357	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1178	0.2392572868873602	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGT	1125	0.228492740024007	No Hit
AATCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCT	979	0.19883945998533584	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCC	923	0.18746559914858527	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	684	0.13892358593459625	No Hit
AATACAGGGATTGGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT	639	0.12978387633363594	No Hit
CCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTGC	509	0.10338027081975071	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAACGCT	45	3.8380676E-10	45.000004	40
CATACCG	65	0.0	45.000004	1
TGTAACG	45	3.8380676E-10	45.000004	1
CGATAGG	90	0.0	45.000004	2
AATCGCG	65	0.0	45.000004	1
GTGCATT	35	1.2100281E-7	45.0	10
TATTTCG	20	7.029355E-4	45.0	39
CTCACCG	25	3.8875456E-5	45.0	1
TCGCACG	35	1.2100281E-7	45.0	1
ACCGGAT	25	3.8875456E-5	45.0	4
GCAAGCG	50	2.1827873E-11	45.0	1
CTCGTCG	25	3.8875456E-5	45.0	1
CTCGTAG	20	7.029355E-4	45.0	1
GTCTGCG	25	3.8875456E-5	45.0	26
TTTACGG	80	0.0	45.0	2
TAGACCG	20	7.029355E-4	45.0	1
CCGTGCG	25	3.8875456E-5	45.0	1
TGCGGTA	25	3.8875456E-5	45.0	29
CACGAAC	20	7.029355E-4	45.0	18
AAGCGCG	20	7.029355E-4	45.0	1