##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3554194_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 492357 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.981084863219166 33.0 31.0 34.0 30.0 34.0 2 32.176101893544725 34.0 31.0 34.0 30.0 34.0 3 32.291818741279194 34.0 31.0 34.0 30.0 34.0 4 35.8701755027348 37.0 35.0 37.0 35.0 37.0 5 35.669122201979455 37.0 35.0 37.0 33.0 37.0 6 35.63995027997977 37.0 35.0 37.0 33.0 37.0 7 35.81091768777534 37.0 35.0 37.0 35.0 37.0 8 35.985780642907486 37.0 35.0 37.0 35.0 37.0 9 37.60754086973476 39.0 37.0 39.0 35.0 39.0 10 37.02788626951582 39.0 37.0 39.0 33.0 39.0 11 36.95410037838398 39.0 37.0 39.0 33.0 39.0 12 37.04635254500292 39.0 37.0 39.0 33.0 39.0 13 37.04220311684408 39.0 37.0 39.0 33.0 39.0 14 38.202775628253484 40.0 38.0 41.0 33.0 41.0 15 38.189238702811174 40.0 37.0 41.0 33.0 41.0 16 38.17229368121099 40.0 37.0 41.0 33.0 41.0 17 38.10548646612113 40.0 37.0 41.0 33.0 41.0 18 38.02030031054702 40.0 37.0 41.0 33.0 41.0 19 37.95365964127655 40.0 37.0 41.0 33.0 41.0 20 37.8910871583018 40.0 37.0 41.0 33.0 41.0 21 37.84923338146914 40.0 37.0 41.0 33.0 41.0 22 37.79405390803827 39.0 37.0 41.0 33.0 41.0 23 37.686788245114826 39.0 37.0 41.0 33.0 41.0 24 37.61607938954864 39.0 36.0 41.0 32.0 41.0 25 37.60806284870531 39.0 36.0 41.0 32.0 41.0 26 37.44585940689378 39.0 36.0 41.0 32.0 41.0 27 37.41692105525056 39.0 36.0 41.0 32.0 41.0 28 37.375688778670764 39.0 36.0 41.0 32.0 41.0 29 37.15007200060119 39.0 36.0 41.0 31.0 41.0 30 37.12222838306351 39.0 36.0 41.0 31.0 41.0 31 37.019435084704796 39.0 35.0 41.0 31.0 41.0 32 36.88619233604884 39.0 35.0 41.0 31.0 41.0 33 36.832363508592344 39.0 35.0 40.0 31.0 41.0 34 36.63032718129325 39.0 35.0 40.0 30.0 41.0 35 36.59370131835233 39.0 35.0 40.0 30.0 41.0 36 36.44253661469219 39.0 35.0 40.0 30.0 41.0 37 36.344008514147255 39.0 35.0 40.0 30.0 41.0 38 36.305798434875506 39.0 35.0 40.0 30.0 41.0 39 36.16809957002744 39.0 35.0 40.0 30.0 41.0 40 36.14410884784821 38.0 35.0 40.0 30.0 41.0 41 36.14874978927892 38.0 35.0 40.0 30.0 41.0 42 36.01305962949648 38.0 35.0 40.0 29.0 41.0 43 35.93270533373142 38.0 35.0 40.0 29.0 41.0 44 35.79286980788331 38.0 35.0 40.0 28.0 41.0 45 35.572417981261566 38.0 34.0 40.0 27.0 41.0 46 35.416882465365575 38.0 34.0 40.0 26.0 41.0 47 35.30156167171382 38.0 34.0 40.0 26.0 41.0 48 35.21678172545531 38.0 34.0 40.0 26.0 41.0 49 35.11656379415749 38.0 34.0 40.0 26.0 41.0 50 34.978038293352185 38.0 34.0 40.0 26.0 41.0 51 33.80368309986453 37.0 32.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 2.0 12 4.0 13 5.0 14 11.0 15 10.0 16 20.0 17 58.0 18 138.0 19 230.0 20 471.0 21 807.0 22 1230.0 23 1703.0 24 2315.0 25 2975.0 26 3791.0 27 4766.0 28 6029.0 29 7775.0 30 9999.0 31 12441.0 32 16061.0 33 20525.0 34 29116.0 35 40842.0 36 48289.0 37 65680.0 38 96898.0 39 120112.0 40 52.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 18.364723158196185 34.763596333554716 22.301500740316477 24.57017976793262 2 20.296248453865793 33.428995627156716 21.351783360447804 24.922972558529686 3 19.250462570858137 32.932607843495674 23.10660760383218 24.71032198181401 4 19.453770333315052 33.09204499986798 21.053422618140903 26.400762048676064 5 17.343716043440025 35.05444220352305 19.292708339680352 28.30913341335657 6 20.04846077135087 36.29886444185825 20.45832597078949 23.194348816001398 7 84.26832562551158 6.713218254234224 4.939505277674533 4.0789508425796726 8 86.00060525188024 5.637779091187898 3.7694193440938184 4.592196312838042 9 77.58110476747562 10.690819872572138 7.674106390281849 4.053968969670382 10 29.080728008335416 45.709921865638144 12.87642909514844 12.332921030878001 11 16.75613426842718 26.783005014653998 38.14792924646141 18.31293147045741 12 21.978970543731478 24.69569844645247 35.086126530139715 18.23920447967633 13 21.223218112060962 27.477216735011385 32.505072538828536 18.79449261409912 14 17.38657112623564 28.501676628950136 33.35242517116645 20.75932707364778 15 16.35743982516751 31.7527728863406 31.769630572937928 20.120156715553957 16 18.4299197533497 31.687779395844885 30.42812430817476 19.454176542630652 17 18.460994765992968 31.365452303917685 31.216170380435333 18.95738254965401 18 18.56742160667971 29.171109581056022 31.475535028444806 20.785933783819463 19 17.67376111236359 34.118129731069125 30.829052902670217 17.379056253897073 20 18.899091512865667 32.12607924737538 31.219826264275717 17.755002975483237 21 18.88568660545092 33.02745771868786 29.25621043267385 18.830645243187362 22 18.4077813456496 30.714298771013716 30.111890355981537 20.76602952735515 23 18.30866627264363 31.601459916280263 28.001226752133107 22.088647058943003 24 15.422345980660374 33.389390218885886 30.94319772035332 20.245066080100415 25 18.151869476822714 32.95291830927559 28.138119291489712 20.757092922411992 26 19.449098926185673 32.92407744786811 28.54067272324756 19.086150902698652 27 16.7742105829713 31.70930848957159 29.33034363277053 22.186137294686578 28 20.134374041599894 30.542269125857864 29.879132418143744 19.444224414398494 29 18.889545593949105 29.99510517774704 30.415734924049016 20.69961430425484 30 21.805112956655435 31.326659314278054 27.91531348188408 18.95291424718243 31 20.887689217376824 31.46862947007964 26.910148530436253 20.733532782107293 32 21.50918947024212 29.421740728780133 27.983353542246785 21.08571625873096 33 21.192752413391098 30.044662714250027 28.510410129235492 20.252174743123383 34 20.01433918884062 28.01239750831206 30.546534323671644 21.426728979175678 35 20.84280308800322 28.43749555708561 32.194322412395884 18.52537894251529 36 20.76582642269735 30.082033971285068 31.100603830147637 18.051535775869947 37 20.782684109294678 30.16957207879648 30.311542234598065 18.736201577310773 38 20.268423115747314 28.429574475431448 33.469007244743146 17.832995164078095 39 18.583873083961436 29.61733051424068 31.761709491283764 20.03708691051412 40 19.568118255655957 29.644952747701364 30.237612139159186 20.549316857483493 41 17.522854351618847 29.145112184857737 32.561535633696685 20.77049782982673 42 19.892679498818946 29.435145636194875 30.502257508271434 20.16991735671474 43 19.15825305621734 29.208887047406655 30.8558627174997 20.776997178876304 44 21.45719467784555 28.759416439697212 28.40093671868177 21.382452163775472 45 21.431603490962857 30.20409987062233 29.297034468891475 19.06726216952333 46 18.157759511898885 30.45838690218683 32.054180198514494 19.329673387399794 47 19.695464876096004 29.609815641902117 30.117780391057707 20.576939090944173 48 19.012017702601973 28.42469996364427 32.52538300460844 20.037899329145315 49 19.428991565063562 28.933274026773255 29.955905978791815 21.68182842937137 50 19.532778045198913 27.66732269471136 29.214370873167233 23.585528386922498 51 18.81439687056343 26.972501660380576 32.191682051844495 22.021419417211494 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 7942.0 1 5810.0 2 3678.0 3 2345.0 4 1012.0 5 897.0 6 782.0 7 942.0 8 1102.0 9 1423.0 10 1744.0 11 2148.0 12 2552.0 13 2870.0 14 3188.0 15 3100.0 16 3012.0 17 2966.5 18 2921.0 19 3079.5 20 3238.0 21 3006.5 22 2775.0 23 3337.5 24 3900.0 25 4589.0 26 6569.0 27 7860.0 28 9873.5 29 11887.0 30 13196.0 31 14505.0 32 16504.0 33 18503.0 34 19629.5 35 20756.0 36 22043.0 37 23330.0 38 24581.0 39 25832.0 40 26809.5 41 27787.0 42 27948.5 43 28110.0 44 33583.5 45 39057.0 46 42123.5 47 45190.0 48 47213.0 49 49236.0 50 44938.5 51 40641.0 52 35998.0 53 31355.0 54 26393.5 55 21432.0 56 17510.5 57 13589.0 58 11578.0 59 9567.0 60 8088.5 61 6610.0 62 5959.0 63 5308.0 64 4321.0 65 3334.0 66 2713.0 67 2092.0 68 1601.0 69 1110.0 70 933.0 71 756.0 72 617.5 73 479.0 74 448.0 75 321.0 76 225.0 77 184.0 78 143.0 79 101.0 80 59.0 81 46.5 82 34.0 83 24.0 84 14.0 85 12.0 86 10.0 87 7.0 88 4.0 89 2.0 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 492357.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.17800228695653 #Duplication Level Percentage of deduplicated Percentage of total 1 74.77837507763519 24.062187242630383 2 9.79606370810247 6.304355208049863 3 3.8684723511793195 3.734391364898288 4 2.1971640837711486 2.8280140364962714 5 1.3916332720163043 2.238998930477272 6 1.022484499867948 1.9740905145077061 7 0.7815224492750196 1.7603481812055615 8 0.6046528287099355 1.5565216084034434 9 0.5133970214695335 1.4868081477866983 >10 4.294532289687655 28.768461876189306 >50 0.5313212543736396 11.914206331672641 >100 0.21404837184539954 9.959173654332137 >500 0.003166396033215969 0.7609018154252081 >1k 0.0025331168265727757 1.2436485751312387 >5k 6.332792066431939E-4 1.4078925127939912 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 6909 1.4032500807341015 No Hit CTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTGCT 2481 0.50390265599961 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1319 0.2678950436370357 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1178 0.2392572868873602 No Hit AATGATACCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGT 1125 0.228492740024007 No Hit AATCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCT 979 0.19883945998533584 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCC 923 0.18746559914858527 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 684 0.13892358593459625 No Hit AATACAGGGATTGGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT 639 0.12978387633363594 No Hit CCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTGC 509 0.10338027081975071 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6525752655085639 0.0 2 0.0 0.0 0.0 0.8946760176051117 0.0 3 0.0 0.0 0.0 1.1824753177064609 0.0 4 0.0 0.0 0.0 2.606848282851671 0.0 5 0.0 0.0 0.0 2.806703266126002 0.0 6 0.0 0.0 0.0 4.2083285095977105 0.0 7 0.0 0.0 0.0 5.144437877393842 0.0 8 0.0 0.0 0.0 5.947513694331552 0.0 9 0.0 0.0 0.0 7.502279849783795 0.0 10 0.0 0.0 0.0 9.709011956771205 0.0 11 0.0 0.0 0.0 11.843641910239928 0.0 12 0.0 0.0 0.0 12.751113521286383 0.0 13 0.0 0.0 0.0 13.123404359032167 0.0 14 0.0 0.0 0.0 13.500163499249528 0.0 15 0.0 0.0 0.0 13.815381928153759 0.0 16 0.0 0.0 0.0 14.388746377120667 0.0 17 0.0 0.0 0.0 15.219850636834655 0.0 18 0.0 0.0 0.0 16.156772423261984 0.0 19 0.0 0.0 0.0 16.60847718220722 0.0 20 0.0 0.0 0.0 17.060385045810257 0.0 21 0.0 0.0 0.0 17.58398885361638 0.0 22 0.0 0.0 0.0 18.17238304726042 0.0 23 0.0 0.0 0.0 18.717312844135453 0.0 24 0.0 0.0 0.0 19.131849450703452 0.0 25 0.0 0.0 0.0 19.4889074391143 0.0 26 0.0 0.0 0.0 19.82524875242964 0.0 27 0.0 0.0 0.0 20.192258869072646 0.0 28 0.0 0.0 0.0 20.543833031722915 0.0 29 0.0 0.0 0.0 20.947401986769762 0.0 30 0.0 0.0 0.0 21.458007096476745 0.0 31 0.0 0.0 0.0 21.843702841637267 0.0 32 0.0 0.0 0.0 22.193449062367346 0.0 33 0.0 0.0 0.0 22.555584667223172 0.0 34 0.0 0.0 0.0 22.930718970178145 0.0 35 0.0 0.0 0.0 23.312555726840483 0.0 36 0.0 0.0 0.0 23.694392483502824 0.0 37 0.0 0.0 0.0 24.069323681799993 0.0 38 0.0 0.0 0.0 24.432677914602614 0.0 39 0.0 0.0 0.0 24.78851727506667 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GAACGCT 45 3.8380676E-10 45.000004 40 CATACCG 65 0.0 45.000004 1 TGTAACG 45 3.8380676E-10 45.000004 1 CGATAGG 90 0.0 45.000004 2 AATCGCG 65 0.0 45.000004 1 GTGCATT 35 1.2100281E-7 45.0 10 TATTTCG 20 7.029355E-4 45.0 39 CTCACCG 25 3.8875456E-5 45.0 1 TCGCACG 35 1.2100281E-7 45.0 1 ACCGGAT 25 3.8875456E-5 45.0 4 GCAAGCG 50 2.1827873E-11 45.0 1 CTCGTCG 25 3.8875456E-5 45.0 1 CTCGTAG 20 7.029355E-4 45.0 1 GTCTGCG 25 3.8875456E-5 45.0 26 TTTACGG 80 0.0 45.0 2 TAGACCG 20 7.029355E-4 45.0 1 CCGTGCG 25 3.8875456E-5 45.0 1 TGCGGTA 25 3.8875456E-5 45.0 29 CACGAAC 20 7.029355E-4 45.0 18 AAGCGCG 20 7.029355E-4 45.0 1 >>END_MODULE