SRR3554183_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554183_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	330877
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5251	1.5869945629342626	No Hit
CTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCCGTCTTCTGCT	1291	0.390175201056586	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1035	0.3128050604907564	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	813	0.245710641718826	No Hit
TCAAAGGGGGTTTTCCATGCTTTGTTTTTGTTGTAGTTGTGTGCGTGTTTT	558	0.1686427282645817	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	528	0.15957591491702353	No Hit
ATCAATGGGGCTATTTGTGCTTATATTTTTCTCAATATGTACAATCATAAA	527	0.15927368780543827	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	494	0.14930019312312431	No Hit
AACTTTGGGTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	467	0.14114006111032196	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTGC	20	7.0259965E-4	45.0	14
ATCTAGT	20	7.0259965E-4	45.0	39
CTATCCG	20	7.0259965E-4	45.0	1
ACGCAGT	20	7.0259965E-4	45.0	31
GCAACGC	20	7.0259965E-4	45.0	28
CAGCACG	20	7.0259965E-4	45.0	1
TAGCGCG	20	7.0259965E-4	45.0	1
CAACCCG	20	7.0259965E-4	45.0	1
GGATCGC	20	7.0259965E-4	45.0	8
CGTCTAG	40	6.7902874E-9	45.0	1
CGACAGC	20	7.0259965E-4	45.0	38
GCGTTAA	20	7.0259965E-4	45.0	16
TCTAGCG	20	7.0259965E-4	45.0	1
TAACACG	20	7.0259965E-4	45.0	1
CTGCCCG	40	6.7902874E-9	45.0	1
TGTTACC	20	7.0259965E-4	45.0	26
TACTCCA	20	7.0259965E-4	45.0	40
TCCAACG	20	7.0259965E-4	45.0	1
ATTGGCG	20	7.0259965E-4	45.0	32
CGTAAGG	35	1.2084274E-7	45.0	2