##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3554183_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 330877 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.171949092865326 33.0 31.0 34.0 30.0 34.0 2 32.35469071588536 34.0 31.0 34.0 30.0 34.0 3 32.46126203997256 34.0 31.0 34.0 30.0 34.0 4 35.98497024574086 37.0 35.0 37.0 35.0 37.0 5 35.81549034837719 37.0 35.0 37.0 35.0 37.0 6 35.80412056443935 37.0 35.0 37.0 35.0 37.0 7 35.882920239242985 37.0 35.0 37.0 35.0 37.0 8 36.050885978777615 37.0 35.0 37.0 35.0 37.0 9 37.67072053965673 39.0 38.0 39.0 35.0 39.0 10 37.16629140133645 39.0 37.0 39.0 34.0 39.0 11 37.136954215614864 39.0 37.0 39.0 34.0 39.0 12 37.18754098955201 39.0 37.0 39.0 34.0 39.0 13 37.17134161637104 39.0 37.0 39.0 33.0 39.0 14 38.3924086594112 40.0 38.0 41.0 34.0 41.0 15 38.4010825775137 40.0 38.0 41.0 34.0 41.0 16 38.374275032716085 40.0 38.0 41.0 34.0 41.0 17 38.31788247596539 40.0 38.0 41.0 34.0 41.0 18 38.197321058882906 40.0 37.0 41.0 33.0 41.0 19 38.14773465668511 40.0 37.0 41.0 34.0 41.0 20 38.07734898466802 40.0 37.0 41.0 33.0 41.0 21 38.02000441251583 40.0 37.0 41.0 33.0 41.0 22 37.973122942966725 40.0 37.0 41.0 33.0 41.0 23 37.8733910184147 40.0 37.0 41.0 33.0 41.0 24 37.86190034363223 40.0 37.0 41.0 33.0 41.0 25 37.830819307476794 40.0 37.0 41.0 33.0 41.0 26 37.73478059822835 40.0 36.0 41.0 33.0 41.0 27 37.737403929556905 40.0 36.0 41.0 33.0 41.0 28 37.65088235205227 40.0 36.0 41.0 33.0 41.0 29 37.58142451726775 40.0 36.0 41.0 33.0 41.0 30 37.52517702953061 40.0 36.0 41.0 33.0 41.0 31 37.40752001499047 39.0 36.0 41.0 32.0 41.0 32 37.36405371180227 39.0 36.0 41.0 32.0 41.0 33 37.23686445416273 39.0 35.0 41.0 32.0 41.0 34 37.198007114426204 39.0 35.0 41.0 32.0 41.0 35 37.12616470773127 39.0 35.0 41.0 31.0 41.0 36 37.067571937608236 39.0 35.0 41.0 31.0 41.0 37 37.004630119349486 39.0 35.0 41.0 31.0 41.0 38 36.95937463166071 39.0 35.0 41.0 31.0 41.0 39 36.88236414135766 39.0 35.0 41.0 31.0 41.0 40 36.80303859137988 39.0 35.0 41.0 31.0 41.0 41 36.721089710073535 39.0 35.0 41.0 31.0 41.0 42 36.654524188746876 39.0 35.0 41.0 31.0 41.0 43 36.56982806299622 39.0 35.0 41.0 30.0 41.0 44 36.497904054981156 39.0 35.0 40.0 30.0 41.0 45 36.36980811600685 39.0 35.0 40.0 30.0 41.0 46 36.2513109100965 39.0 35.0 40.0 30.0 41.0 47 36.15523895586578 38.0 35.0 40.0 30.0 41.0 48 36.07266748670956 38.0 35.0 40.0 29.0 41.0 49 35.97187776726699 38.0 35.0 40.0 29.0 41.0 50 35.88140608141394 38.0 35.0 40.0 29.0 41.0 51 34.89441393629657 37.0 33.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 4.0 13 3.0 14 7.0 15 16.0 16 20.0 17 43.0 18 82.0 19 148.0 20 247.0 21 424.0 22 645.0 23 872.0 24 1221.0 25 1534.0 26 1918.0 27 2499.0 28 3184.0 29 4080.0 30 5337.0 31 6937.0 32 9166.0 33 12265.0 34 18384.0 35 26175.0 36 29268.0 37 40383.0 38 67171.0 39 98802.0 40 42.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.002831868035557 34.08154691924794 20.281252550041255 26.634368662675257 2 21.164057942981835 33.436292036013384 20.81831012732828 24.5813398936765 3 19.847254417804805 34.183699682963756 21.25805057468485 24.710995324546584 4 19.384846937079338 33.3824956101512 20.251936520217484 26.98072093255198 5 17.26260815952756 36.193207747894235 17.62951187299208 28.91467221958613 6 20.305430718968076 38.71499076696174 19.63660212102987 21.342976393040313 7 84.81822550373704 7.495534594426327 4.169223004318826 3.5170168975178084 8 86.58323183539503 6.493651719521151 3.784185664159189 3.1389307809246336 9 77.48619577667834 12.810802805876504 6.304759774780357 3.398241642664797 10 29.215388195613475 47.178558799795695 12.79750481296675 10.808548191624077 11 19.595499233854273 29.860945305959618 34.27587895199727 16.267676508188845 12 23.133974256294636 26.904559700432486 32.41506662596675 17.54639941730613 13 21.957404110893172 27.84660160724378 30.567854519957567 19.62813976190548 14 17.800572418149343 30.99278583884646 31.41197484261523 19.794666900388965 15 17.855275525346276 33.0418856553946 30.71957252997337 18.383266289285746 16 20.519709741082035 32.28148224264606 29.860038624624863 17.338769391647048 17 19.496973195477473 32.613932065389854 29.857016353509007 18.03207838562366 18 19.44801240340066 32.27997110708814 29.1204888825757 19.15152760693551 19 19.45828812519456 33.55808956198224 29.944359988757153 17.039262324066044 20 21.32333163078727 32.781365885208096 28.545652916340515 17.349649567664116 21 20.715250682277706 33.67595813550051 27.852343922363897 17.756447259857893 22 18.683075583978336 32.43017798154601 29.679609039008454 19.207137395467196 23 18.453080752061947 33.0234498015879 29.773601670711475 18.74986777563868 24 17.59687134494087 32.80856632525077 30.515569229653316 19.078993100155042 25 18.713902749360035 34.35959586190639 27.56976157303167 19.356739815701907 26 18.419835769787564 34.96949017308547 27.90342030422181 18.70725375290516 27 18.185609758308978 32.65926613212765 28.82249295055262 20.33263115901075 28 18.268722213994927 32.69916011085691 29.40760463858171 19.62451303656646 29 18.22308592014555 33.512453268132866 28.948219428972095 19.31624138274948 30 19.645971161489012 32.98808922953243 27.66012747939567 19.7058121295829 31 19.634486531248772 34.829256793309895 26.06769282845287 19.468563846988456 32 21.152875539853177 32.78015697676176 27.51928964539693 18.547677837988136 33 18.48149010055096 34.98641489133424 26.531006990513088 20.001088017601706 34 17.893960595629192 33.103539986158 28.56620435992831 20.436295058284497 35 18.46668097208328 32.58068708311548 30.019010085318715 18.93362185948253 36 18.91488377856424 34.35536468234419 28.540515055443567 18.189236483648003 37 18.93331963237094 35.047464767874466 27.656500754056644 18.362714845697948 38 18.272348939333952 33.71887438534561 30.68723422903375 17.321542446286685 39 18.96354234352947 33.964282799952855 27.429528193256104 19.642646663261573 40 20.966401412005066 31.856248696645583 28.36764114761679 18.809708743732564 41 16.890868812277674 33.109886755501286 29.795059795634028 20.204184636587012 42 19.39572711309641 32.27634438174911 27.98955503102361 20.33837347413087 43 19.441363406945783 32.461911828262465 27.504782744040835 20.591942020750913 44 19.781973361702384 31.630787271402966 28.23677680830037 20.35046255859428 45 19.548049577335387 33.32265464205732 27.813356624969398 19.315939155637896 46 17.8670623826981 32.21106332564669 30.215759934960722 19.70611435669448 47 18.07046122879499 33.95491375949371 27.77376487335173 20.200860138359573 48 19.03637907742152 31.060786938953143 30.811147344783713 19.091686638841622 49 18.479374510769865 32.50482807810757 28.65566358495755 20.36013382616501 50 17.562719681331735 31.468793539593264 28.909232131577596 22.059254647497408 51 18.094639397721814 30.666682785445953 29.361968344732333 21.876709472099904 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 6067.0 1 4515.5 2 2964.0 3 1934.5 4 905.0 5 791.0 6 677.0 7 735.5 8 794.0 9 955.0 10 1116.0 11 1457.5 12 1799.0 13 1850.0 14 1901.0 15 1989.5 16 2078.0 17 2168.0 18 2258.0 19 2238.5 20 2219.0 21 2491.0 22 2763.0 23 3376.5 24 3990.0 25 4495.0 26 5466.5 27 5933.0 28 7445.0 29 8957.0 30 9992.5 31 11028.0 32 12294.0 33 13560.0 34 14879.0 35 16198.0 36 17321.5 37 18445.0 38 19637.5 39 20830.0 40 19827.5 41 18825.0 42 19894.5 43 20964.0 44 21420.0 45 21876.0 46 23097.5 47 24319.0 48 24820.0 49 25321.0 50 23935.0 51 22549.0 52 20027.0 53 17505.0 54 15218.0 55 12931.0 56 11392.0 57 9853.0 58 8744.5 59 7636.0 60 7295.0 61 6954.0 62 6147.0 63 5340.0 64 4121.0 65 2902.0 66 2379.0 67 1856.0 68 1419.0 69 982.0 70 781.0 71 580.0 72 486.5 73 393.0 74 320.5 75 211.5 76 175.0 77 153.5 78 132.0 79 78.5 80 25.0 81 17.0 82 9.0 83 6.0 84 3.0 85 6.0 86 9.0 87 5.5 88 2.0 89 1.0 90 0.0 91 1.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 2.0 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 330877.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.26277164620293 #Duplication Level Percentage of deduplicated Percentage of total 1 74.56899999999493 22.566646188855525 2 9.378999999999362 5.676690705394359 3 3.686999999999749 3.3473651717862785 4 2.0629999999998594 2.4972839162444957 5 1.3870000000066813 2.098723213674283 6 0.9669999999999599 1.7558460109126213 7 0.7959999999999459 1.6862416361263128 8 0.629999999999957 1.5252436909685239 9 0.5479999999999626 1.492559897590627 >10 5.117999999999651 31.881224673839693 >50 0.6339999999999568 13.499919803653745 >100 0.21499999999998534 8.945070043184053 >500 0.003999999999999728 0.7341748401368331 >1k 0.001999999999999864 0.7039120684906323 >5k 9.99999999999932E-4 1.5890981391420078 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 5251 1.5869945629342626 No Hit CTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCCGTCTTCTGCT 1291 0.390175201056586 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1035 0.3128050604907564 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 813 0.245710641718826 No Hit TCAAAGGGGGTTTTCCATGCTTTGTTTTTGTTGTAGTTGTGTGCGTGTTTT 558 0.1686427282645817 No Hit AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 528 0.15957591491702353 No Hit ATCAATGGGGCTATTTGTGCTTATATTTTTCTCAATATGTACAATCATAAA 527 0.15927368780543827 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 494 0.14930019312312431 No Hit AACTTTGGGTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 467 0.14114006111032196 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4518295318199814 0.0 2 0.0 0.0 0.0 0.6153343991876136 0.0 3 0.0 0.0 0.0 0.7966706661387767 0.0 4 0.0 0.0 0.0 1.5948524678354796 0.0 5 0.0 0.0 0.0 1.7021430924482512 0.0 6 0.0 0.0 0.0 2.4359505193772915 0.0 7 0.0 0.0 0.0 2.9896305878015093 0.0 8 0.0 0.0 0.0 3.4753095561190412 0.0 9 0.0 0.0 0.0 4.286487123613911 0.0 10 0.0 0.0 0.0 5.491164390392805 0.0 11 0.0 0.0 0.0 6.561955046739423 0.0 12 0.0 0.0 0.0 7.076950044880726 0.0 13 0.0 0.0 0.0 7.282766707870296 0.0 14 0.0 0.0 0.0 7.488583370859867 0.0 15 0.0 0.0 0.0 7.683822084943952 0.0 16 0.0 0.0 0.0 8.096966546481019 0.0 17 0.0 0.0 0.0 8.628584035759513 0.0 18 0.0 0.0 0.0 9.277163417221505 0.0 19 0.0 0.0 0.0 9.603568697733598 0.0 20 0.0 0.0 0.0 9.930578432468863 0.0 21 0.0 0.0 0.0 10.30987345750838 0.0 22 0.0 0.0 0.0 10.741151545740562 0.0 23 0.0 0.0 0.0 11.126491113011785 0.0 24 0.0 0.0 0.0 11.435367221051932 0.0 25 0.0 0.0 0.0 11.7007226250238 0.0 26 0.0 0.0 0.0 11.95187335475116 0.0 27 0.0 0.0 0.0 12.242011381873022 0.0 28 0.0 0.0 0.0 12.536380588557076 0.0 29 0.0 0.0 0.0 12.83528320191491 0.0 30 0.0 0.0 0.0 13.199164644263579 0.0 31 0.0 0.0 0.0 13.49444053228239 0.0 32 0.0 0.0 0.0 13.788205284743274 0.0 33 0.0 0.0 0.0 14.106450433242564 0.0 34 0.0 0.0 0.0 14.399006277257108 0.0 35 0.0 0.0 0.0 14.732362781335663 0.0 36 0.0 0.0 0.0 15.05665247206666 0.0 37 0.0 0.0 0.0 15.375804301900706 0.0 38 0.0 0.0 0.0 15.723063253112183 0.0 39 0.0 0.0 0.0 16.083015743010243 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTGC 20 7.0259965E-4 45.0 14 ATCTAGT 20 7.0259965E-4 45.0 39 CTATCCG 20 7.0259965E-4 45.0 1 ACGCAGT 20 7.0259965E-4 45.0 31 GCAACGC 20 7.0259965E-4 45.0 28 CAGCACG 20 7.0259965E-4 45.0 1 TAGCGCG 20 7.0259965E-4 45.0 1 CAACCCG 20 7.0259965E-4 45.0 1 GGATCGC 20 7.0259965E-4 45.0 8 CGTCTAG 40 6.7902874E-9 45.0 1 CGACAGC 20 7.0259965E-4 45.0 38 GCGTTAA 20 7.0259965E-4 45.0 16 TCTAGCG 20 7.0259965E-4 45.0 1 TAACACG 20 7.0259965E-4 45.0 1 CTGCCCG 40 6.7902874E-9 45.0 1 TGTTACC 20 7.0259965E-4 45.0 26 TACTCCA 20 7.0259965E-4 45.0 40 TCCAACG 20 7.0259965E-4 45.0 1 ATTGGCG 20 7.0259965E-4 45.0 32 CGTAAGG 35 1.2084274E-7 45.0 2 >>END_MODULE