SRR3554175_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554175_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	701104
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5853	0.834826216937858	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1458	0.20795773522901023	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1104	0.1574659394326662	No Hit
CTGTCTCTTATACACATCTGACGCAAACACCGTCGTATGCCGTCTTCTGCT	1026	0.1463406284944887	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	895	0.1276558114060111	No Hit
CACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCAA	703	0.10027043063511262	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCATC	20	7.031401E-4	45.000004	27
TCGTTAA	20	7.031401E-4	45.000004	12
TCGCACG	20	7.031401E-4	45.000004	1
CGAACCG	40	6.8084773E-9	45.000004	1
CGAAATA	20	7.031401E-4	45.000004	26
GCGAAAG	20	7.031401E-4	45.000004	1
ACCGAAA	20	7.031401E-4	45.000004	15
ATTCGTT	20	7.031401E-4	45.000004	10
TCGATCC	20	7.031401E-4	45.000004	10
CGAATAT	115	0.0	45.000004	13
GATTCGT	20	7.031401E-4	45.000004	9
TTCGCAT	20	7.031401E-4	45.000004	26
TTCGATC	20	7.031401E-4	45.000004	9
TAGTACG	20	7.031401E-4	45.000004	1
TGCGTAG	35	1.2110286E-7	45.000004	1
ATAGCGG	90	0.0	45.0	2
TACGTAG	45	3.8380676E-10	45.0	1
TCGCAAC	30	2.1642863E-6	44.999996	16
GCGCGTA	30	2.1642863E-6	44.999996	13
CTTCACG	30	2.1642863E-6	44.999996	1