SRR3554174_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554174_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	420603
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	7282	1.7313238374429094	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1300	0.30908005886786355	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1251	0.29743011818745946	No Hit
CTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGCT	852	0.202566315504169	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	725	0.17237157129169312	No Hit
CGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA	702	0.1669032317886463	No Hit
TCAATTGGGTCTGGATGTAATAAAATCATGGAAAGCTTTATGTGAAGAAAA	427	0.10152091164352132	No Hit

Adapter graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATCGG	30	2.1622072E-6	45.000004	2
CGGGCTA	35	1.2094642E-7	45.000004	6
CGTAAGG	30	2.1622072E-6	45.000004	2
CGGTAGT	35	1.2094642E-7	45.000004	12
AATCGCG	35	1.2094642E-7	45.000004	1
TGCCGAT	35	1.2094642E-7	45.000004	38
TCGCCGG	20	7.0281804E-4	45.0	2
TGTTTCG	25	3.8865728E-5	45.0	15
CGGGTAT	90	0.0	45.0	6
TCGCACT	20	7.0281804E-4	45.0	33
GTTTCGT	25	3.8865728E-5	45.0	16
TACCACG	20	7.0281804E-4	45.0	1
CGAAACG	20	7.0281804E-4	45.0	1
CCGGATA	25	3.8865728E-5	45.0	32
CGACCAG	25	3.8865728E-5	45.0	1
GTCTATC	20	7.0281804E-4	45.0	10
TTCGTGA	25	3.8865728E-5	45.0	18
TACGGGT	95	0.0	45.0	4
CGACAAG	40	6.7975634E-9	45.0	1
TTATCGT	25	3.8865728E-5	45.0	37