SRR3554171_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554171_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	716996
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4031	0.5622067626597638	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2323	0.32399064987810255	No Hit
ACAGGCAGAATTTGAAACCTAAAGAACTCCCAGATTTCAGGCTTATCCTGT	746	0.10404521085194338	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	726	0.10125579501140872	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGATACG	55	1.8189894E-12	45.000004	1
GATCCAT	20	7.031509E-4	45.0	9
TTAAGCG	35	1.211065E-7	45.0	1
TTACGTC	20	7.031509E-4	45.0	20
GTACGAG	20	7.031509E-4	45.0	1
ATAGCGA	25	3.8893333E-5	44.999996	41
TACGCGA	25	3.8893333E-5	44.999996	30
TGCGACG	25	3.8893333E-5	44.999996	1
GTATACG	25	3.8893333E-5	44.999996	1
TATACGG	95	0.0	42.63158	2
TGACCGG	55	6.002665E-11	40.909092	2
TTACGGG	275	0.0	40.909092	3
TACGGGA	365	0.0	40.684933	4
AATACCG	50	1.0804797E-9	40.499996	1
ATACCCG	50	1.0804797E-9	40.499996	1
CGCATAG	45	1.9264917E-8	40.0	1
TACGCGG	45	1.9264917E-8	40.0	2
TTACCGG	45	1.9264917E-8	40.0	2
ATGTACG	40	3.4557888E-7	39.375	1
TATACCG	40	3.4557888E-7	39.375	1