SRR3554169_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554169_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	431095
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5181	1.2018232640137325	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1139	0.26421090478896764	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	807	0.18719771744047134	No Hit
CTGTCTCTTATACACATCTGACGCTAGCGAACTCGTATGCCGTCTTCTGCT	806	0.18696575000869878	TruSeq Adapter, Index 1 (95% over 24bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	499	0.115751748454517	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGGT	35	1.2095734E-7	45.000004	23
CGAACTT	20	7.028374E-4	45.000004	39
CCGATTT	40	6.7975634E-9	45.000004	18
TTGTCGT	20	7.028374E-4	45.000004	5
CACGAAA	20	7.028374E-4	45.000004	1
AAGCGCG	20	7.028374E-4	45.000004	1
CGTTCTA	20	7.028374E-4	45.000004	42
CTGACGT	20	7.028374E-4	45.000004	30
ACGATAG	20	7.028374E-4	45.000004	1
TTACGTG	20	7.028374E-4	45.000004	1
ATCGGCG	20	7.028374E-4	45.000004	1
CGGTAAC	35	1.2095734E-7	45.000004	26
TAATGCC	20	7.028374E-4	45.000004	35
AATCGCA	35	1.2095734E-7	45.000004	25
CTTAACG	25	3.886735E-5	45.0	1
GCCCATC	25	3.886735E-5	45.0	31
CTACTGA	25	3.886735E-5	45.0	41
ACGCATG	25	3.886735E-5	45.0	1
CGACGAG	25	3.886735E-5	45.0	1
TAGCGTC	25	3.886735E-5	45.0	10