SRR3554168_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554168_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	703135
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5914	0.8410902600496348	No Hit
CTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGCT	1569	0.22314349307032078	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1353	0.19242392997077376	No Hit
AACTTTGGGTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1104	0.1570111002865737	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1068	0.15189117310331587	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	851	0.12102938980423389	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	802	0.11406060002702184	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	35	1.2110286E-7	45.000004	1
AACCGAG	35	1.2110286E-7	45.000004	1
ATTAGCG	35	1.2110286E-7	45.000004	1
TTAGCGG	70	0.0	45.000004	2
CCGTAGG	35	1.2110286E-7	45.000004	2
TATCCCG	35	1.2110286E-7	45.000004	1
AAACTCG	20	7.0314156E-4	45.0	1
CGAACAG	45	3.8380676E-10	45.0	1
CGACGAA	20	7.0314156E-4	45.0	17
ACTTGCG	20	7.0314156E-4	45.0	1
CGTGACG	20	7.0314156E-4	45.0	1
TAGCGGC	20	7.0314156E-4	45.0	27
ATTACCG	20	7.0314156E-4	45.0	1
TGGCGAT	20	7.0314156E-4	45.0	18
ATAGACG	45	3.8380676E-10	45.0	1
AAGCGCG	25	3.8892547E-5	45.0	1
CGCGAAG	40	6.8084773E-9	45.0	1
TATGCGG	50	2.1827873E-11	45.0	2
CATTACG	25	3.8892547E-5	45.0	1
AGCGGCC	25	3.8892547E-5	45.0	4