SRR3554167_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554167_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	685919
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5710	0.8324598093944038	No Hit
CTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGCT	1663	0.24244845236828255	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1310	0.19098464979101032	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1106	0.16124352875485298	No Hit
AACTTTGGGTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1014	0.14783086632678202	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	859	0.12523344593166247	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	813	0.118527114717627	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAGCG	40	6.8084773E-9	45.000004	1
TTGGACG	20	7.031294E-4	45.000004	42
CTCAACG	50	2.1827873E-11	45.000004	1
CGAAACG	25	3.889154E-5	45.000004	1
GCGAATG	20	7.031294E-4	45.000004	1
CGGCACG	20	7.031294E-4	45.000004	1
CCGGATG	25	3.889154E-5	45.000004	5
CCGGAAC	20	7.031294E-4	45.000004	38
ACCGACA	20	7.031294E-4	45.000004	11
GCGCCGA	20	7.031294E-4	45.000004	28
TCGATTG	20	7.031294E-4	45.000004	1
TAACGCG	40	6.8084773E-9	45.000004	1
GCACCGT	25	3.889154E-5	45.000004	45
TAACCCG	20	7.031294E-4	45.000004	1
CGCTATC	25	3.889154E-5	45.000004	40
CGCTACG	25	3.889154E-5	45.000004	1
TCTCGCG	25	3.889154E-5	45.000004	1
GATATAC	25	3.889154E-5	45.000004	9
CGCAGCG	20	7.031294E-4	45.000004	1
TTACGTA	20	7.031294E-4	45.000004	21