SRR3554162_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554162_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	712722
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	7632	1.070824248444695	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1528	0.21438934114563604	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1304	0.18296053720805588	No Hit
CTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGCT	1293	0.181417158443264	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1163	0.16317722758663267	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	754	0.10579159896846177	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACCG	25	3.8893082E-5	45.000004	1
CATATAG	25	3.8893082E-5	45.000004	10
CTATACG	30	2.1643373E-6	45.000004	1
GCACGAG	30	2.1643373E-6	45.000004	1
TATTCCG	30	2.1643373E-6	45.000004	1
CGTAACG	25	3.8893082E-5	45.000004	1
TCATACG	30	2.1643373E-6	45.000004	1
GTCGACT	20	7.0314814E-4	45.0	27
GACGTAA	20	7.0314814E-4	45.0	33
TAGCGAT	20	7.0314814E-4	45.0	42
ATTACCG	35	1.211065E-7	45.0	1
GTTACGG	20	7.0314814E-4	45.0	2
TACGCAC	20	7.0314814E-4	45.0	32
CGAATCG	20	7.0314814E-4	45.0	1
CATACCG	20	7.0314814E-4	45.0	1
GCGATAT	20	7.0314814E-4	45.0	44
ATACGTA	35	1.211065E-7	45.0	22
ACGAGTC	20	7.0314814E-4	45.0	28
CCGTTGT	20	7.0314814E-4	45.0	40
CCGTTAG	20	7.0314814E-4	45.0	7