SRR3554161_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554161_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	693646
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	7293	1.0514008586512429	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1520	0.2191319491498545	No Hit
CTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGCT	1366	0.19693042272282982	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1219	0.17573805658794256	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1126	0.16233064127811592	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	736	0.10610599643045587	No Hit
CTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACTC	699	0.10077186345772916	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTGC	20	7.031349E-4	45.000004	30
CGTATAT	20	7.031349E-4	45.000004	30
CTATACG	20	7.031349E-4	45.000004	1
ACCTCGC	20	7.031349E-4	45.000004	12
ATACGTT	20	7.031349E-4	45.000004	39
TAGGACG	20	7.031349E-4	45.000004	24
ATACGCG	40	6.8084773E-9	45.000004	1
TAGCTAC	20	7.031349E-4	45.000004	22
TTTCGTA	25	3.8892E-5	45.0	34
TATGCGG	25	3.8892E-5	45.0	2
ATCCGTT	25	3.8892E-5	45.0	45
CACGTAT	35	1.2109922E-7	45.0	34
CTTACCG	35	1.2109922E-7	45.0	1
TTATGCA	30	2.1642536E-6	44.999996	38
TCATACG	30	2.1642536E-6	44.999996	1
ACGAACG	60	0.0	44.999996	1
CGACACC	65	0.0	41.53846	34
TAACGGG	380	0.0	41.44737	3
TATACGG	60	3.6379788E-12	41.249996	2
AAATGCG	60	3.6379788E-12	41.249996	1