SRR3554160_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554160_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1003879
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	8281	0.824900212077352	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1721	0.17143500362095432	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1602	0.1595809853577971	No Hit
CTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGCT	1565	0.15589528220034485	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1412	0.1406544015762856	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1363	0.13577333523263263	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1098	0.10937573153736657	No Hit
ACAGGCAGAATTTGAAACCTAAAGAACTCCCAGATTTCAGGCTTATCCTGT	1059	0.10549080118221418	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGC	20	7.0328586E-4	45.000004	10
ACTATCG	20	7.0328586E-4	45.000004	42
TCGCACA	20	7.0328586E-4	45.000004	25
CTATCGT	20	7.0328586E-4	45.000004	43
TCCGAAC	20	7.0328586E-4	45.000004	40
TATATCG	20	7.0328586E-4	45.000004	28
CGTTAGT	20	7.0328586E-4	45.000004	41
TACGACG	35	1.2117198E-7	45.000004	1
TCCCGAT	20	7.0328586E-4	45.000004	40
ACGTCGA	20	7.0328586E-4	45.000004	42
ACTCACG	35	1.2117198E-7	45.000004	1
CCGCCCA	20	7.0328586E-4	45.000004	36
GATAGCG	20	7.0328586E-4	45.000004	1
CGTATCG	25	3.8904524E-5	45.0	43
ACATCCG	25	3.8904524E-5	45.0	1
TCAACCG	50	2.1827873E-11	45.0	1
ATTTACG	30	2.1652268E-6	44.999996	1
CGACACT	30	2.1652268E-6	44.999996	34
CCGAACG	30	2.1652268E-6	44.999996	1
ACTACGG	155	0.0	42.09677	2