SRR3554158_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554158_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1082389
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6767	0.625191128143394	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2140	0.19771080452591444	No Hit
CACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCAA	1740	0.16075551396032295	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1487	0.13738129267758634	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1426	0.13174561086633363	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1253	0.11576244769671531	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1122	0.1036595900364841	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAAACG	20	7.0331036E-4	45.000004	1
AATTACG	55	1.8189894E-12	45.000004	1
ATACGCG	40	6.8139343E-9	45.000004	1
TAATACG	45	3.8562575E-10	45.0	1
ATTCGCT	25	3.890655E-5	45.0	13
ACGATAG	35	1.2118471E-7	45.0	1
CGCTATA	25	3.890655E-5	45.0	24
TCGACAA	25	3.890655E-5	45.0	14
GTGCGAT	25	3.890655E-5	45.0	33
TAAACGG	170	0.0	42.35294	2
TCGGGAT	185	0.0	41.351353	5
TTACGAG	55	6.184564E-11	40.909092	1
CGAACCG	50	1.0822987E-9	40.5	1
AGATACG	45	1.9281288E-8	40.0	1
CCTCGCG	45	1.9281288E-8	40.0	1
CTTACCG	45	1.9281288E-8	40.0	1
CGCTAAT	40	3.4579716E-7	39.375004	22
GTAACGG	155	0.0	39.193546	2
CATACGA	425	0.0	38.64706	18
TAGCACG	35	6.247952E-6	38.571426	1