SRR3554157_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554157_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1056705
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6661	0.6303556811030514	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2083	0.19712218641910467	No Hit
CACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCAA	1741	0.16475742993550707	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1406	0.13305510998812345	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1283	0.12141515370893485	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1154	0.10920739468441996	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1113	0.10532740925802377	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	40	6.8139343E-9	45.000004	1
CGTTAGA	20	7.033027E-4	45.000004	11
TACGATT	20	7.033027E-4	45.000004	10
TCGTAAG	35	1.2118107E-7	45.000004	1
CGTAAAT	35	1.2118107E-7	45.000004	34
ACGTAGT	20	7.033027E-4	45.000004	30
TTCGACG	30	2.165336E-6	45.000004	1
TTTTCGA	20	7.033027E-4	45.000004	28
CTATACG	25	3.890592E-5	45.0	1
TATTACG	25	3.890592E-5	45.0	1
TATAGCG	75	0.0	45.0	1
CGCGTAG	25	3.890592E-5	45.0	1
ACGGGTA	195	0.0	42.692307	5
CATACGA	490	0.0	41.785713	18
AATCCCG	50	1.0822987E-9	40.5	1
TATCCCG	50	1.0822987E-9	40.5	1
TCGTTCA	95	0.0	40.263157	16
GCGATAG	95	0.0	40.263157	1
ATACCGG	90	0.0	40.0	2
CGAACAG	85	0.0	39.705883	1