SRR3554155_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554155_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	768793
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	7858	1.022121689453468	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1681	0.218654436239664	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1624	0.21124021680738506	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1298	0.1688360846157548	No Hit
CTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTGCT	1155	0.1502354990224937	Illumina Single End Adapter 2 (95% over 22bp)
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	918	0.11940795506722875	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	779	0.10132766557447845	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCACCG	30	2.1645592E-6	45.000004	1
GCGAACG	30	2.1645592E-6	45.000004	1
CGCATAG	30	2.1645592E-6	45.000004	1
TCTTACG	30	2.1645592E-6	45.000004	1
TGACGGT	30	2.1645592E-6	45.000004	9
TCGGACA	30	2.1645592E-6	45.000004	21
AACTGCG	30	2.1645592E-6	45.000004	1
CGTAACG	30	2.1645592E-6	45.000004	1
CTTCGCG	35	1.2112287E-7	45.0	1
AACCGGT	20	7.031828E-4	45.0	38
CGAACAT	20	7.031828E-4	45.0	11
GCGACAG	25	3.889596E-5	45.0	1
CATGCGT	25	3.889596E-5	45.0	34
ACGCACG	45	3.8380676E-10	45.0	1
TGGACGT	20	7.031828E-4	45.0	40
CGGTTTA	20	7.031828E-4	45.0	21
CCGGATT	25	3.889596E-5	45.0	22
GGATCGA	35	1.2112287E-7	45.0	8
CGATTCT	25	3.889596E-5	45.0	31
TAACGCG	55	1.8189894E-12	45.0	1