SRR3554141_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554141_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1213477
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3487	0.2873560850349862	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2136	0.1760231137466965	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1845	0.15204243673345272	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1689	0.13918681606655917	No Hit
CACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCAA	1550	0.12773212842105783	No Hit
ACAGGCAGAATTTGAAACCTAAAGAACTCCCAGATTTCAGGCTTATCCTGT	1322	0.10894314436944418	No Hit
CTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTCTGCT	1306	0.10762461917283969	TruSeq Adapter, Index 23 (96% over 26bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAAACG	55	1.8189894E-12	45.0	1
ATTACGC	20	7.0334435E-4	45.0	1
ATATGCG	25	3.8909355E-5	45.0	1
GCGATCG	20	7.0334435E-4	45.0	9
GTATACG	20	7.0334435E-4	45.0	1
TACGTAA	20	7.0334435E-4	45.0	45
TATCGCG	60	0.0	44.999996	1
CGATAAG	30	2.1656033E-6	44.999996	1
TAACGCG	70	0.0	41.785713	1
CGTATAG	60	3.6379788E-12	41.249996	1
CGCATAG	60	3.6379788E-12	41.249996	1
TATACGG	120	0.0	41.249996	2
TTACGTA	55	6.184564E-11	40.909092	44
CCGAACG	50	1.0822987E-9	40.5	1
CGGGTTA	95	0.0	40.263157	6
TCATACG	45	1.9284926E-8	40.0	1
CTAACGG	250	0.0	39.6	2
AAACGCG	40	3.4584264E-7	39.375	1
TAAGACG	40	3.4584264E-7	39.375	1
ATACCGG	155	0.0	39.193546	2