SRR3554133_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554133_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	731426
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3494	0.47769699190348713	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	980	0.13398484604047436	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	902	0.12332074604949783	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	849	0.11607462682485994	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	825	0.11279336528917484	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	821	0.11224648836656068	No Hit
CACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCAA	772	0.10554724606453696	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTTA	40	6.8084773E-9	45.000004	6
AAATCGT	20	7.031601E-4	45.000004	43
CGTATAG	20	7.031601E-4	45.000004	1
CGTGAGT	20	7.031601E-4	45.000004	34
CGATTAG	20	7.031601E-4	45.000004	1
AATTGCG	20	7.031601E-4	45.000004	1
TCATACG	40	6.8084773E-9	45.000004	1
CCAACGA	20	7.031601E-4	45.000004	27
ATACGAG	20	7.031601E-4	45.000004	1
GGCGAAT	20	7.031601E-4	45.000004	16
GCGAATT	25	3.8894097E-5	45.0	17
CGAATTA	25	3.8894097E-5	45.0	18
TATAGCG	25	3.8894097E-5	45.0	1
GCGAGAC	135	0.0	43.333332	21
ATAACGG	130	0.0	43.26923	2
TTAACGG	60	3.6379788E-12	41.249996	2
TAACGGG	390	0.0	40.96154	3
CCGACAG	55	6.002665E-11	40.90909	1
CAAACGC	50	1.0804797E-9	40.5	34
AAGTACG	45	1.9266736E-8	40.0	1