SRR3554132_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554132_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	791647
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4658	0.5883935643032816	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1057	0.13351910636937928	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	952	0.12025561898169258	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	906	0.11444494831661081	No Hit
ACAGGCAGAATTTGAAACCTAAAGAACTCCCAGATTTCAGGCTTATCCTGT	900	0.11368703475160015	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	895	0.11305544011409126	No Hit
CTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGCCGTCTTCTGCT	817	0.10320256376895258	RNA PCR Primer, Index 41 (96% over 27bp)
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	798	0.10080250414641881	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGTACG	35	1.2112832E-7	45.000004	1
TTAGGCG	35	1.2112832E-7	45.000004	1
CGATTCG	20	7.0319534E-4	45.000004	11
TAACGCG	30	2.1646429E-6	45.000004	1
ATGTCGC	20	7.0319534E-4	45.000004	15
GCCGATT	20	7.0319534E-4	45.000004	9
ACGATAG	20	7.0319534E-4	45.000004	1
AGCGACG	40	6.8102963E-9	45.000004	1
ACTCGAT	20	7.0319534E-4	45.000004	41
TCGACGG	20	7.0319534E-4	45.000004	2
TTATTCG	30	2.1646429E-6	45.000004	24
TGTAACG	35	1.2112832E-7	45.000004	1
CGATAAT	30	2.1646429E-6	45.000004	37
GTAACGT	20	7.0319534E-4	45.000004	21
ATACCCG	65	0.0	45.000004	1
TCAACGT	20	7.0319534E-4	45.000004	27
CGACGAA	25	3.889702E-5	45.0	34
CAATACG	45	3.8380676E-10	45.0	1
CGCTACG	110	0.0	42.954544	1
AACGGGA	860	0.0	41.860466	4