SRR3554131_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554131_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	773445
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4626	0.5981032911196013	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	959	0.12399071685769511	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	917	0.11856046648436541	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	916	0.11843117480880995	No Hit
ACAGGCAGAATTTGAAACCTAAAGAACTCCCAGATTTCAGGCTTATCCTGT	900	0.11636250799992243	No Hit
CTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGCCGTCTTCTGCT	850	0.10989792422214896	RNA PCR Primer, Index 41 (96% over 27bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	829	0.1071827990354841	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGCG	40	6.8102963E-9	45.000004	1
TATTCGA	35	1.2112469E-7	45.000004	25
ACGTCGA	20	7.031853E-4	45.000004	27
CATAACG	40	6.8102963E-9	45.000004	1
CGCAATA	20	7.031853E-4	45.000004	35
AATACGG	35	1.2112469E-7	45.000004	2
TAATCCG	40	6.8102963E-9	45.000004	1
ATTAGCG	25	3.8896178E-5	45.0	1
TAGCGTC	25	3.8896178E-5	45.0	45
TAACGCG	25	3.8896178E-5	45.0	1
ACGATAG	45	3.8380676E-10	45.0	1
CAATACG	25	3.8896178E-5	45.0	1
CGAGGGT	125	0.0	43.199997	4
ATACCCG	80	0.0	42.187504	1
CGAACAG	70	0.0	41.785717	1
ACCGGGT	105	0.0	40.714287	4
ACTACGG	185	0.0	40.135136	2
CTAGCGG	185	0.0	40.135136	2
CGTGATA	45	1.9268555E-8	40.0	18
TCTAGCG	45	1.9268555E-8	40.0	1