SRR3554128_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554128_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	260013
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	11022	4.239018818289854	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2411	0.9272613292412302	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1737	0.668043520900878	No Hit
CTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGCT	1662	0.6391988092903047	RNA PCR Primer, Index 38 (95% over 24bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1162	0.44690073188648255	No Hit
AAACTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCT	473	0.18191398122401573	RNA PCR Primer, Index 27 (95% over 21bp)
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	415	0.15960740424517236	No Hit
ATTAATGGGAACATTTATCTATTAAAATTGCCATTTCATTAAGCAATTTTC	349	0.13422405802786783	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTT	345	0.13268567340863727	No Hit
AAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	345	0.13268567340863727	No Hit
ACCAAGGGATTGTCTTTTAAGGTAATCTTTTCTGAACATTTATCTATCATG	318	0.12230157722883087	No Hit
TACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	298	0.11460965413267797	No Hit
AATACTGGGATCACTTCTGTGTTAAAATGGAAGGTTTTTTGTGATGTATGA	279	0.10730232719133273	No Hit
GGCTGAGGGATATATTTTCTTTTTATTCATAAATTACTACACATTGTGAGT	279	0.10730232719133273	No Hit
AACTATGGGTGGTGATGAAGACAGGTATGTACATTTTTTTAAATTTTGAAT	277	0.10653313488171745	No Hit
CTCGATGGGGTCTTCCTTTGCCTTTCCTCTTGATAGTGTTTTCTGATGAGC	273	0.10499475026248686	No Hit
GCAGCAGGGAGAAGCTATTTTTTACTTTTTTTACTTGGAAATAAATCCTCT	267	0.10268717333364102	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAGGTAT	20	7.023207E-4	45.000004	22
AACGTAG	40	6.7793735E-9	45.000004	1
CGGAAGA	20	7.023207E-4	45.000004	19
AGGTAAG	20	7.023207E-4	45.000004	18
TGGAGGT	20	7.023207E-4	45.000004	15
TTGGCGA	20	7.023207E-4	45.000004	13
TCGTTCA	40	6.7793735E-9	45.000004	16
ATCTCGC	20	7.023207E-4	45.000004	19
TCCGCTT	20	7.023207E-4	45.000004	19
TCACCGG	20	7.023207E-4	45.000004	2
GGTCGTT	20	7.023207E-4	45.000004	8
CGTGCTT	20	7.023207E-4	45.000004	11
CCTAGTT	20	7.023207E-4	45.000004	29
TTAGCGG	20	7.023207E-4	45.000004	2
TAGGTTC	20	7.023207E-4	45.000004	10
GACGTGC	20	7.023207E-4	45.000004	9
CGTTGGG	40	6.7793735E-9	45.000004	3
GGCGTAA	20	7.023207E-4	45.000004	36
ATTACGG	20	7.023207E-4	45.000004	2
GCTATAA	20	7.023207E-4	45.000004	16