SRR3554126_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554126_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1197072
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3579	0.29897951000441075	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1635	0.13658326316211555	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1232	0.10291778606466445	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTTTA	25	3.8909024E-5	45.000004	27
CGGTCTA	25	3.8909024E-5	45.000004	31
TCATACG	25	3.8909024E-5	45.000004	1
TACCGTA	25	3.8909024E-5	45.000004	13
CCGATAT	20	7.0334045E-4	45.0	30
CGACATA	20	7.0334045E-4	45.0	40
ATATCGT	20	7.0334045E-4	45.0	39
CGTACGT	20	7.0334045E-4	45.0	14
TCGTACT	20	7.0334045E-4	45.0	31
TCGTAAT	20	7.0334045E-4	45.0	37
CGTCGGA	20	7.0334045E-4	45.0	26
TATCCCG	20	7.0334045E-4	45.0	1
CGTATGG	60	3.6379788E-12	41.249996	2
ATGCGAA	50	1.0822987E-9	40.500004	15
CGTAATG	45	1.9284926E-8	40.0	1
ACTACGG	205	0.0	39.512196	2
ACGTTAG	40	3.45839E-7	39.375	1
ATTACCG	80	0.0	39.375	1
ATTCACG	80	0.0	39.375	1
CATACGA	440	0.0	39.374996	18