SRR3554123_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554123_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	787984
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6135	0.7785691080021929	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1725	0.21891307437714472	No Hit
CTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTGCT	1557	0.19759284452476192	TruSeq Adapter, Index 14 (95% over 22bp)
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1310	0.16624703039655628	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1032	0.1309671262360657	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	20	7.0319336E-4	45.000004	9
TACTTCG	20	7.0319336E-4	45.000004	14
CGAAACG	80	0.0	45.000004	1
TAGGTCG	20	7.0319336E-4	45.000004	1
GTCTCGC	20	7.0319336E-4	45.000004	31
TAACGCG	35	1.2112832E-7	45.000004	1
ACGGCAA	20	7.0319336E-4	45.000004	34
ACGTGCG	70	0.0	45.000004	1
CGAATCT	30	2.1646301E-6	45.000004	33
GCCTATC	20	7.0319336E-4	45.000004	37
TTAACGC	30	2.1646301E-6	45.000004	24
ACTCGCG	30	2.1646301E-6	45.000004	1
ACTCGAT	20	7.0319336E-4	45.000004	38
TACTCGA	20	7.0319336E-4	45.000004	37
ACGTCAC	20	7.0319336E-4	45.000004	42
TTACGTA	20	7.0319336E-4	45.000004	34
ACCCGTA	20	7.0319336E-4	45.000004	31
CGTCCAA	20	7.0319336E-4	45.000004	13
CACCCGT	20	7.0319336E-4	45.000004	30
CCGCACG	60	0.0	45.000004	1